View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_128 (Length: 234)
Name: NF0743_low_128
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_128 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 4580272 - 4580326
Alignment:
| Q |
31 |
aattccatcttgatgtttgatcattatcaggtttaggggatttgttatattgaag |
85 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
4580272 |
aattccatcttgatgtttgatcattataaggtttaggggatgtgttatattgaag |
4580326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 4580345 - 4580391
Alignment:
| Q |
108 |
aaggaatgttatattgaagtttttgatactgtatttgatatttttgg |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4580345 |
aaggaatgttatattgaagtttttgatactgtatttgatatttttgg |
4580391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University