View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_129 (Length: 230)

Name: NF0743_low_129
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_129
NF0743_low_129
[»] chr2 (1 HSPs)
chr2 (46-202)||(17831065-17831208)
[»] chr4 (2 HSPs)
chr4 (46-150)||(7134985-7135089)
chr4 (83-139)||(42499086-42499142)
[»] chr3 (2 HSPs)
chr3 (53-150)||(23216850-23216947)
chr3 (93-145)||(30765876-30765928)
[»] scaffold0524 (1 HSPs)
scaffold0524 (51-150)||(5308-5407)
[»] chr7 (3 HSPs)
chr7 (53-150)||(33865753-33865850)
chr7 (53-150)||(5790356-5790453)
chr7 (146-202)||(34575821-34575879)
[»] chr6 (1 HSPs)
chr6 (53-150)||(11075036-11075133)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 17831208 - 17831065
Alignment:
Q  46 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||     
T  17831208 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaaca-------------ttgagccatgtgcatgcctt 17831122  T
Q  146 ggaaatggtaactgtaacattggaaagtaggaaacattgattaccaatgtagagact 202  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  17831121 ggaaatggtaactgtttcattggaaagtaggaaacattgattagcaatgtagagact 17831065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 7135089 - 7134985
Alignment:
Q  46 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 145  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7135089 caaaaggaagtaaatagttttgctatggctggttcagatgcctttggatcgagaagagtgggtaacattgaagccaatttttgacccatgtgcatgcctc 7134990  T
Q  146 ggaaa 150  Q
     ||||    
T  7134989 agaaa 7134985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 42499086 - 42499142
Alignment:
Q  83 atgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgca 139  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||||| |||||||    
T  42499086 atgcctttgcattgtgaagagtgggtaacattgaagctaatttttgagctatgtgca 42499142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 23216850 - 23216947
Alignment:
Q  53 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 150  Q
    ||||||||||||||| || || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  23216850 aaggaaatagttttgttagggatggttcagatgcctttggattgagaagagtgggtaagattgaagccaaattttgagccatgtgcatgcctcggaaa 23216947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 30765876 - 30765928
Alignment:
Q  93 attgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30765876 attgaaaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 30765928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 5407 - 5308
Alignment:
Q  51 ggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 150  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||    
T  5407 ggaaggaaatagtttttctatggttggttcagatgcctttagattgagaagagtgagtcacattgaagccaatttttgagccatgtgcatgcctcagaaa 5308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 33865850 - 33865753
Alignment:
Q  53 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 150  Q
    ||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  33865850 aaggaaatagttttgttagggatggttcagatgcctttgaattgagaagagtgggtaagattgaagccaaattttgagccatgtgcatgcctcggaaa 33865753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 5790356 - 5790453
Alignment:
Q  53 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 150  Q
    ||||| ||||||||| || || ||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||    
T  5790356 aaggagatagttttgttagggatggttcaaatgcatttggattgagaagagtgggtaacatttaagccaatttttgagccatgtgcatatctcggaaa 5790453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 34575879 - 34575821
Alignment:
Q  146 ggaaatggtaactgtaacattggaaagtaggaaac--attgattaccaatgtagagact 202  Q
    ||||||||||||||| |||||||||||| ||||||  |||||||||||| |||||||||    
T  34575879 ggaaatggtaactgttacattggaaagttggaaacatattgattaccaacgtagagact 34575821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 11075133 - 11075036
Alignment:
Q  53 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 150  Q
    ||||||||||||||| || || ||||||| |||||||||||||||||||| ||||||| ||||| | ||| |||||||||||||||||||||||||||    
T  11075133 aaggaaatagttttgttagggatggttcagatgcctttggattgagaagaatgggtaagattgatgccaaattttgagccatgtgcatgcctcggaaa 11075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University