View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_13 (Length: 557)
Name: NF0743_low_13
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 30 - 544
Target Start/End: Original strand, 1946368 - 1946882
Alignment:
| Q |
30 |
cgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcct |
129 |
Q |
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| T |
1946368 |
cgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcct |
1946467 |
T |
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| Q |
130 |
agttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaattggtgaatttatta |
229 |
Q |
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| T |
1946468 |
agttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcggcttcctaattggtgaatttatta |
1946567 |
T |
|
| Q |
230 |
acatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatt |
329 |
Q |
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| T |
1946568 |
acatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatt |
1946667 |
T |
|
| Q |
330 |
tgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcatta |
429 |
Q |
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| T |
1946668 |
tgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcatta |
1946767 |
T |
|
| Q |
430 |
ataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattg |
529 |
Q |
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| T |
1946768 |
ataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattg |
1946867 |
T |
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| Q |
530 |
tatcacattcatcct |
544 |
Q |
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| T |
1946868 |
tatcacattcatcct |
1946882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 51 - 542
Target Start/End: Original strand, 1928271 - 1928768
Alignment:
| Q |
51 |
ccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaa |
150 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||| |||| || || |||||||||||||||| ||| |||| |
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| T |
1928271 |
ccattctggtttccatgtgcaaattgatccaggaccataagtttctgtcaaaccatatgaatgaactaaatcaaatcctagttcttccatcctaaaaaat |
1928370 |
T |
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| Q |
151 |
atatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaat------tggtgaatttattaacatgttcagaagtg |
244 |
Q |
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| T |
1928371 |
acgtccggtggcggtggagcaccacctgtcatcactaccaccttcctcggaagtggctttctgatatcaggtggtgcatttattaatgagttcagaactg |
1928470 |
T |
|
| Q |
245 |
ctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagc |
344 |
Q |
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|||||| || ||| |||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
1928471 |
ttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacatttctttggcaaacatttgcgccaccttgagc |
1928570 |
T |
|
| Q |
345 |
agcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagcc |
444 |
Q |
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|||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | | || ||||| ||||| | || |||||||||| |
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| T |
1928571 |
agcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatagacttcatctcattgagaagaattgtagcc |
1928670 |
T |
|
| Q |
445 |
aaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatc |
542 |
Q |
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||||||||||||||||||||||| |||||| | | |||||| |||||| ||||||| ||||||||||||||| | | ||||||| ||| |||||||| |
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| T |
1928671 |
aaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgtaattcaaagaaattggatcccattcatc |
1928768 |
T |
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