View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_135 (Length: 223)
Name: NF0743_low_135
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_135 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 19426538 - 19426408
Alignment:
| Q |
84 |
aagaatatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
183 |
Q |
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| T |
19426538 |
aagaaaatcccaagaatgtgtagtgtggagcttacttattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
19426439 |
T |
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| Q |
184 |
agaagattctttcagataaagtaagaagata |
214 |
Q |
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|||||||||||||| ||||||||| |||||| |
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| T |
19426438 |
agaagattctttcaaataaagtaaaaagata |
19426408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 19419832 - 19419729
Alignment:
| Q |
84 |
aagaatatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
183 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19419832 |
aagaaaatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
19419733 |
T |
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| Q |
184 |
agaa |
187 |
Q |
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|||| |
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| T |
19419732 |
agaa |
19419729 |
T |
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