View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_145 (Length: 215)

Name: NF0743_low_145
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_145
NF0743_low_145
[»] chr2 (1 HSPs)
chr2 (35-191)||(17831065-17831208)
[»] chr4 (2 HSPs)
chr4 (87-191)||(7134985-7135089)
chr4 (98-154)||(42499086-42499142)
[»] chr3 (2 HSPs)
chr3 (87-184)||(23216850-23216947)
chr3 (92-144)||(30765876-30765928)
[»] scaffold0524 (1 HSPs)
scaffold0524 (87-186)||(5308-5407)
[»] chr7 (3 HSPs)
chr7 (87-184)||(33865753-33865850)
chr7 (87-184)||(5790356-5790453)
chr7 (35-91)||(34575821-34575879)
[»] chr6 (1 HSPs)
chr6 (87-184)||(11075036-11075133)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 17831065 - 17831208
Alignment:
Q  35 agtctctacattggtaatcaatgtttcctactttccaatgttacagttaccatttccgaggcatgcacatggctcaaaaattgacttcaatgttacccac 134  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||             ||||||||||    
T  17831065 agtctctacattgctaatcaatgtttcctactttccaatgaaacagttaccatttccaaggcatgcacatggctcaa-------------tgttacccac 17831151  T
Q  135 tcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831152 tcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg 17831208  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 7134985 - 7135089
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttcc 186  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  7134985 tttctgaggcatgcacatgggtcaaaaattggcttcaatgttacccactcttctcgatccaaaggcatctgaaccagccatagcaaaactatttacttcc 7135084  T
Q  187 ttttg 191  Q
    |||||    
T  7135085 ttttg 7135089  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 42499142 - 42499086
Alignment:
Q  98 tgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcat 154  Q
    ||||||| |||||||||||  ||||||||||||||||||||| |||| |||||||||    
T  42499142 tgcacatagctcaaaaattagcttcaatgttacccactcttcacaatgcaaaggcat 42499086  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 23216947 - 23216850
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 184  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || || |||||||||||||||    
T  23216947 tttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt 23216850  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 30765928 - 30765876
Alignment:
Q  92 gaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30765928 gaggcatgcacatggctcaaaaattgacttcaatgttacccactcttttcaat 30765876  T

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Target: scaffold0524 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 5308 - 5407
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttcc 186  Q
    |||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||    
T  5308 tttctgaggcatgcacatggctcaaaaattggcttcaatgtgactcactcttctcaatctaaaggcatctgaaccaaccatagaaaaactatttccttcc 5407  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 33865753 - 33865850
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 184  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||| ||||||| || || |||||||||||||||    
T  33865753 tttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaattcaaaggcatctgaaccatccctaacaaaactatttcctt 33865850  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 5790453 - 5790356
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 184  Q
    ||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| || || ||||||||| |||||    
T  5790453 tttccgagatatgcacatggctcaaaaattggcttaaatgttacccactcttctcaatccaaatgcatttgaaccatccctaacaaaactatctcctt 5790356  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 34575821 - 34575879
Alignment:
Q  35 agtctctacattggtaatcaat--gtttcctactttccaatgttacagttaccatttcc 91  Q
    ||||||||| ||||||||||||  |||||| |||||||||||| |||||||||||||||    
T  34575821 agtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttaccatttcc 34575879  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 11075036 - 11075133
Alignment:
Q  87 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 184  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||| ||||||| || || |||||||||||||||    
T  11075036 tttccgaggcatgcacatggctcaaaatttggcatcaatcttacccattcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt 11075133  T

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