View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_148 (Length: 210)

Name: NF0743_low_148
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_148
NF0743_low_148
[»] chr2 (1 HSPs)
chr2 (22-178)||(17831065-17831208)
[»] chr4 (2 HSPs)
chr4 (74-178)||(7134985-7135089)
chr4 (85-141)||(42499086-42499142)
[»] chr3 (2 HSPs)
chr3 (74-171)||(23216850-23216947)
chr3 (79-131)||(30765876-30765928)
[»] scaffold0524 (1 HSPs)
scaffold0524 (74-173)||(5308-5407)
[»] chr7 (3 HSPs)
chr7 (74-171)||(33865753-33865850)
chr7 (74-171)||(5790356-5790453)
chr7 (22-78)||(34575821-34575879)
[»] chr6 (1 HSPs)
chr6 (74-171)||(11075036-11075133)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 17831065 - 17831208
Alignment:
Q  22 agtctctacattggtaatcaatgtttcctactttccaatgttacagttaccatttccgaggcatgcacatggctcaaaaattgacttcaatgttacccac 121  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||             ||||||||||    
T  17831065 agtctctacattgctaatcaatgtttcctactttccaatgaaacagttaccatttccaaggcatgcacatggctcaa-------------tgttacccac 17831151  T
Q  122 tcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831152 tcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg 17831208  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 7134985 - 7135089
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttcc 173  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  7134985 tttctgaggcatgcacatgggtcaaaaattggcttcaatgttacccactcttctcgatccaaaggcatctgaaccagccatagcaaaactatttacttcc 7135084  T
Q  174 ttttg 178  Q
    |||||    
T  7135085 ttttg 7135089  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 42499142 - 42499086
Alignment:
Q  85 tgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcat 141  Q
    ||||||| |||||||||||  ||||||||||||||||||||| |||| |||||||||    
T  42499142 tgcacatagctcaaaaattagcttcaatgttacccactcttcacaatgcaaaggcat 42499086  T

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Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 23216947 - 23216850
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 171  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || || |||||||||||||||    
T  23216947 tttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt 23216850  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 30765928 - 30765876
Alignment:
Q  79 gaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30765928 gaggcatgcacatggctcaaaaattgacttcaatgttacccactcttttcaat 30765876  T

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Target: scaffold0524 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 5308 - 5407
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttcc 173  Q
    |||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||    
T  5308 tttctgaggcatgcacatggctcaaaaattggcttcaatgtgactcactcttctcaatctaaaggcatctgaaccaaccatagaaaaactatttccttcc 5407  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 33865753 - 33865850
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 171  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||| ||||||| || || |||||||||||||||    
T  33865753 tttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaattcaaaggcatctgaaccatccctaacaaaactatttcctt 33865850  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 5790453 - 5790356
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 171  Q
    ||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| || || ||||||||| |||||    
T  5790453 tttccgagatatgcacatggctcaaaaattggcttaaatgttacccactcttctcaatccaaatgcatttgaaccatccctaacaaaactatctcctt 5790356  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 34575821 - 34575879
Alignment:
Q  22 agtctctacattggtaatcaat--gtttcctactttccaatgttacagttaccatttcc 78  Q
    ||||||||| ||||||||||||  |||||| |||||||||||| |||||||||||||||    
T  34575821 agtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttaccatttcc 34575879  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 11075036 - 11075133
Alignment:
Q  74 tttccgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt 171  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||| ||||||| || || |||||||||||||||    
T  11075036 tttccgaggcatgcacatggctcaaaatttggcatcaatcttacccattcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt 11075133  T

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