View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_153 (Length: 209)

Name: NF0743_low_153
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_153
NF0743_low_153
[»] chr2 (1 HSPs)
chr2 (25-181)||(17831065-17831208)
[»] chr4 (2 HSPs)
chr4 (25-129)||(7134985-7135089)
chr4 (62-118)||(42499086-42499142)
[»] chr3 (2 HSPs)
chr3 (32-129)||(23216850-23216947)
chr3 (72-124)||(30765876-30765928)
[»] scaffold0524 (1 HSPs)
scaffold0524 (30-129)||(5308-5407)
[»] chr7 (3 HSPs)
chr7 (32-129)||(33865753-33865850)
chr7 (32-129)||(5790356-5790453)
chr7 (125-181)||(34575821-34575879)
[»] chr6 (1 HSPs)
chr6 (32-129)||(11075036-11075133)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 17831208 - 17831065
Alignment:
Q  25 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||     
T  17831208 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaaca-------------ttgagccatgtgcatgcctt 17831122  T
Q  125 ggaaatggtaactgtaacattggaaagtaggaaacattgattaccaatgtagagact 181  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  17831121 ggaaatggtaactgtttcattggaaagtaggaaacattgattagcaatgtagagact 17831065  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 7135089 - 7134985
Alignment:
Q  25 caaaaggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 124  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7135089 caaaaggaagtaaatagttttgctatggctggttcagatgcctttggatcgagaagagtgggtaacattgaagccaatttttgacccatgtgcatgcctc 7134990  T
Q  125 ggaaa 129  Q
     ||||    
T  7134989 agaaa 7134985  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 42499086 - 42499142
Alignment:
Q  62 atgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgca 118  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||||| |||||||    
T  42499086 atgcctttgcattgtgaagagtgggtaacattgaagctaatttttgagctatgtgca 42499142  T

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Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 23216850 - 23216947
Alignment:
Q  32 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 129  Q
    ||||||||||||||| || || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  23216850 aaggaaatagttttgttagggatggttcagatgcctttggattgagaagagtgggtaagattgaagccaaattttgagccatgtgcatgcctcggaaa 23216947  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 30765876 - 30765928
Alignment:
Q  72 attgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 124  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30765876 attgaaaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctc 30765928  T

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Target: scaffold0524 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 5407 - 5308
Alignment:
Q  30 ggaaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 129  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||    
T  5407 ggaaggaaatagtttttctatggttggttcagatgcctttagattgagaagagtgagtcacattgaagccaatttttgagccatgtgcatgcctcagaaa 5308  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 33865850 - 33865753
Alignment:
Q  32 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 129  Q
    ||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  33865850 aaggaaatagttttgttagggatggttcagatgcctttgaattgagaagagtgggtaagattgaagccaaattttgagccatgtgcatgcctcggaaa 33865753  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 5790356 - 5790453
Alignment:
Q  32 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 129  Q
    ||||| ||||||||| || || ||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||    
T  5790356 aaggagatagttttgttagggatggttcaaatgcatttggattgagaagagtgggtaacatttaagccaatttttgagccatgtgcatatctcggaaa 5790453  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 34575879 - 34575821
Alignment:
Q  125 ggaaatggtaactgtaacattggaaagtaggaaac--attgattaccaatgtagagact 181  Q
    ||||||||||||||| |||||||||||| ||||||  |||||||||||| |||||||||    
T  34575879 ggaaatggtaactgttacattggaaagttggaaacatattgattaccaacgtagagact 34575821  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 11075133 - 11075036
Alignment:
Q  32 aaggaaatagttttgctatggctggttcacatgcctttggattgagaagagtgggtaacattgaagtcaatttttgagccatgtgcatgcctcggaaa 129  Q
    ||||||||||||||| || || ||||||| |||||||||||||||||||| ||||||| ||||| | ||| |||||||||||||||||||||||||||    
T  11075133 aaggaaatagttttgttagggatggttcagatgcctttggattgagaagaatgggtaagattgatgccaaattttgagccatgtgcatgcctcggaaa 11075036  T

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