View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_157 (Length: 208)

Name: NF0743_low_157
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_157
NF0743_low_157
[»] chr6 (3 HSPs)
chr6 (36-112)||(4365158-4365234)
chr6 (40-112)||(4369556-4369628)
chr6 (44-107)||(4359773-4359836)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 4365158 - 4365234
Alignment:
Q  36 tgacacttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365158 tgacacttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatct 4365234  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 4369556 - 4369628
Alignment:
Q  40 acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369556 acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatct 4369628  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 4359773 - 4359836
Alignment:
Q  44 gatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatct 107  Q
    |||||||||||||||||||||||||| |||||| || ||  || |||||||||| || ||||||    
T  4359773 gatcctgccgaacatatttacctttccctttctttgtcatcttcggaaagactcttctgtatct 4359836  T

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