View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_162 (Length: 201)
Name: NF0743_low_162
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_162 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 34287035 - 34287159
Alignment:
| Q |
23 |
aatccaaagaaatacaagttgaaaccataattttacttaaatctataaaataattaattcacatatgcatccatgaaataaacattttccatgttagtac |
122 |
Q |
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| T |
34287035 |
aatccaaagaaatacaagttgaaaccataattttacttaaatctataaaataattaattcgcatatgcatccatgaaataaacattttccatgttagtac |
34287134 |
T |
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| Q |
123 |
attataaattacatataacaaatct |
147 |
Q |
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| T |
34287135 |
attataaattacatataacaaatct |
34287159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 34287299 - 34287341
Alignment:
| Q |
130 |
attacatataacaaatctaatatatgtatttataattcaatac |
172 |
Q |
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| T |
34287299 |
attacatataacaaatctaatatatgtatttataattcaatac |
34287341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 35274313 - 35274454
Alignment:
| Q |
28 |
aaagaaatacaagttgaaaccataattttacttaaatctataaaataattaattcacatatgcatccatgaaataaacattttccatgttagtacattat |
127 |
Q |
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| T |
35274313 |
aaagaaatacaagctgaaaccataattttcctttaatctataaaat---taattcacatatgcattcatgaaataaacgtttagcatattagtacattat |
35274409 |
T |
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| Q |
128 |
aaattacatataacaaatctaatatatgtatttataattcaatac |
172 |
Q |
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| T |
35274410 |
aaattacatataacaaatctaatacatgtatttataattcaatac |
35274454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 19347490 - 19347543
Alignment:
| Q |
78 |
aattcacatatgcatccatgaaataaacattttccatgttagtacattataaat |
131 |
Q |
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| T |
19347490 |
aattcacatattcatccatgaaataagctttttgaatattagtacattataaat |
19347543 |
T |
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