View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_19 (Length: 519)
Name: NF0743_low_19
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_19 |
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| [»] scaffold0665 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 14736313 - 14736819
Alignment:
| Q |
1 |
tttggttttgtttttctccatctccgaggtgtatgagccaccacataaatcataaccaaggaaatgtgttatggaaattattcagcttgaggaattgaag |
100 |
Q |
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| T |
14736313 |
tttggttttgtttttctctatctccgaggtgtatgagccaccacacaaatcataaccaagaaaatgtgttatggaaattattcagcttgaggaattgaag |
14736412 |
T |
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| Q |
101 |
attttctgattttggaaaagcacccatttatctatcaacccaagttagatatttttgaatgctatgtcgtcaagaccaagattaggaacgtcatttaaga |
200 |
Q |
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| T |
14736413 |
attttctgattttggaaaagcactcatttatctatcaacccaagttagatatttttgaatgatatgtcgtcaagaccaagattaggaacgtcatttaaga |
14736512 |
T |
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| Q |
201 |
atattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacacagggtcgtcaggcaagttacacaagtaagaggcagataccttt |
300 |
Q |
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| T |
14736513 |
atattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacacagggtcgtcacgcaagttacacaagtaagaggcagataccttt |
14736612 |
T |
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| Q |
301 |
agaactcggtaaaggaggacatgtgttcctgtggttacac-tttagttgggaatttcgaaaaattttcaggattaataaattatgttcaagatattcaga |
399 |
Q |
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| T |
14736613 |
agaactcggtaaaggaggacatgtgttcctgtggttacacttttagttgggaatttcg-aaaagtttcaggattaataaattatgttgaagatattcaga |
14736711 |
T |
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| Q |
400 |
caattttagatactcaggcatgttggtgcagtggtttgacagttcgacatgtacaattatgatagagcggcatgatgtgcttcacgttttcagctaagga |
499 |
Q |
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| T |
14736712 |
caattttagatactcaggcatgttggtgcagtggtttgacagttcgacatgtacaattatgat--agcagcatgatgtgcttcacgttttcagctaagaa |
14736809 |
T |
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| Q |
500 |
ggtatattgt |
509 |
Q |
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| T |
14736810 |
ggtatattgt |
14736819 |
T |
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Target: scaffold0665 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 8602 - 8539
Alignment:
| Q |
445 |
gacatgtacaattatgatagagcggcatgatgtgcttc-acgttttcagctaaggaggtatattgt |
509 |
Q |
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| T |
8602 |
gacatgtacaattatgatag--cagcatgatgtgcttctacgttttcagctaagaaggtatattgt |
8539 |
T |
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