View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_21 (Length: 512)
Name: NF0743_low_21
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 136 - 500
Target Start/End: Original strand, 41703717 - 41704099
Alignment:
| Q |
136 |
cttctttcgatgattcattgccttttctccataatcttactatatggtctggtgtnnnnnnnnnnnncatgtaggcagacagtgcaggattattgaacta |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41703717 |
cttctttcgatggttcattgccttttctccataatcttacaatatggtctggtgcaaaaaagaaaaacatgtaggcagacagtgcaggattattgaacta |
41703816 |
T |
|
| Q |
236 |
ttat----ccaaggtagatggactataacattatagtatccttgttagctaagacgttttgttaggttttaatgaacaattaactcatgttagttcttag |
331 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41703817 |
ttatatatccaaggta-------tataacattataggatccttgttagctaagacgtttttttaggttttaatgaacaattaactcatgttagttcttag |
41703909 |
T |
|
| Q |
332 |
ttttgaaactata---------------------atacataacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacc |
410 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41703910 |
ttttgaaagtataatacagatgttagcttgtataatacataacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacc |
41704009 |
T |
|
| Q |
411 |
tcttgtaatgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704010 |
tcttgtaatgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatatt |
41704099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 41467463 - 41467192
Alignment:
| Q |
64 |
gcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattgccttttct |
163 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |||| | |||||||||| ||||||||||| | ||||| ||||| ||| |
|
|
| T |
41467463 |
gcaaatttggcaatgcagttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgacttctacttcctccgatggttcatg------tct |
41467370 |
T |
|
| Q |
164 |
ccataatcttactatatggtctggtgtnnnnnnnnnnnncatgtaggcagacagtgcaggattattgaactattatccaaggtagatggactataacatt |
263 |
Q |
| |
|
| |||||||||| ||| |||||| || ||||||| ||||||||||||||| ||||||||||| |||||| || | |||||| ||| |
|
|
| T |
41467369 |
cgataatcttacaataaggtctgatgcaaaaaagaaaaagatgtaggtagacagtgcaggatt---gaactattatctaaggtaaataggctataaaatt |
41467273 |
T |
|
| Q |
264 |
atagtatccttgttagctaagacgttttgttaggttttaatgaacaattaactcatgttagttcttagttttgaaactata |
344 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
41467272 |
atagtatccttgttagccatgaccttttgttaggttttaatgaacaattaactcatgttagttattagttttgaaagtata |
41467192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41703615 - 41703722
Alignment:
| Q |
1 |
aagcatgttctggaatcaccgcaaatcaatgttcatccatggcactgataacacaacaagaccgcaaatttgccaatgcagttgacagagtcaaaagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41703615 |
aagcatgttctggaatcaccgcaaatccatgttcatcagtggcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaa |
41703714 |
T |
|
| Q |
101 |
attttctt |
108 |
Q |
| |
|
|| ||||| |
|
|
| T |
41703715 |
atcttctt |
41703722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 41506955 - 41506883
Alignment:
| Q |
69 |
tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctt |
141 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||| |||||| |
|
|
| T |
41506955 |
tttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttctt |
41506883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 41497706 - 41497620
Alignment:
| Q |
69 |
tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
155 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||||||||||||| |||| | ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
41497706 |
tttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattg |
41497620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 33078038 - 33077964
Alignment:
| Q |
81 |
gttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
155 |
Q |
| |
|
||||||| |||||||||||||| ||||| || | | ||||||||||||||||||| || | |||||||| |||| |
|
|
| T |
33078038 |
gttgacacagtcaaaagaaaatattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattg |
33077964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 41513219 - 41513161
Alignment:
| Q |
50 |
aacacaacaagaccgcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
108 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
41513219 |
aacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt |
41513161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 36467243 - 36467105
Alignment:
| Q |
204 |
atgtaggcagacagtgcaggattattgaactattatccaaggtagatggactataacattatagtatccttgttagcta-agacgttttgttaggtttta |
302 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||| |||||| |||| ||||||||||||||||||||||||||| | || | ||||||||| ||||| |
|
|
| T |
36467243 |
atgtaggcaggcagtgcaggatt---gaactaatatctaaggtaaatgggctataacattatagtatccttgttagccatagcccttttgttagatttta |
36467147 |
T |
|
| Q |
303 |
atgaacaattaactcatgttagttcttagttttgaaactata |
344 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
36467146 |
atgaacaattaactcattttagttcttagctttgaaagtata |
36467105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University