View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_22 (Length: 496)
Name: NF0743_low_22
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 476
Target Start/End: Original strand, 4011716 - 4012164
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4011716 |
aaacaggtattacaatctgtccatatttctctttgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgagaatat |
4011815 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4011816 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgacatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
4011915 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
4011916 |
cgaggaaaagcgataaccaaatggccaaaaaatccgtggcggatgtcttcacctctaaagcttacaaaaacatcatcctttgattggggagaaatgtttg |
4012015 |
T |
|
| Q |
329 |
acggtgccttttctgctacagccttcaatttaataacaacnnnnnnncttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4012016 |
acggtgccttttctgctacagccttcaattcaataagaacgaaaaaacttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaa |
4012115 |
T |
|
| Q |
429 |
caatt-aaaaaatgttactacttaattatcaaaaagtgatgctattcat |
476 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4012116 |
caattaaaaaaaatttactacttaatcatcaaaaagtgattctattcat |
4012164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 360
Target Start/End: Original strand, 4003237 - 4003568
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4003237 |
aaacaggtaaaacaatccgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
4003336 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
4003337 |
gaccaatgaaatgaatgatccttcaattgcttctacaagtgcatgtgatatatcatctcccctcttaagtttttcgtcaacaaaggcatttatttgttta |
4003436 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||| || ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
4003437 |
cgaggaaaagctttaatcaaatggccaagaaatccgtgacggatgtcctcgcccctaaagcttacaaaaacatcatactttaattggggagcatcgtttg |
4003536 |
T |
|
| Q |
329 |
acggtgccttttctgctacagccttcaattta |
360 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| |
|
|
| T |
4003537 |
acattgccttttctgctacacccttcaattta |
4003568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 33 - 367
Target Start/End: Original strand, 3821505 - 3821839
Alignment:
| Q |
33 |
aggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgacc |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3821505 |
aggtaatacaatctgtccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgacc |
3821604 |
T |
|
| Q |
133 |
aatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcgag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3821605 |
aatgaaatgggagatccttcaattgcttcaaaaagtgaatgtgatatgtcatctcccctcgtaagtgcgtcatcaacaaaggcatttatttgctttcgag |
3821704 |
T |
|
| Q |
233 |
gaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacgg |
332 |
Q |
| |
|
||||||||||||||||||||| || || | |||||||| ||||| |||||||||||||||||| ||||||||||| |||| |||| | |||||| | |
|
|
| T |
3821705 |
gaaaagccttaaccaaatggctaagaaagctgtggcggatatcctcgcccctaaagcttacaaaaacatcatactttaattgaggagtattgtttggcat |
3821804 |
T |
|
| Q |
333 |
tgccttttctgctacagccttcaatttaataacaa |
367 |
Q |
| |
|
| || ||||||||||| ||||||| ||| |||||| |
|
|
| T |
3821805 |
ttccctttctgctacacccttcaacttattaacaa |
3821839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 4026473 - 4026789
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4026473 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcaaaagttcttctaaacaccaacttgaagaagcatagttttctgagaatat |
4026572 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| |||||||||| |||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4026573 |
gatcaatgaaatgaatgatccttctattgcttctacaagtgaattcgatatgtcatctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt |
4026672 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
|||| |||||||||| ||||||||| || || || |||||||||||||||||||||||| |||| ||| |||||||||||| ||| |||||| |||| | |
|
|
| T |
4026673 |
cgagaaaaagccttagccaaatggccaagaaagccgtggcggatgtcctcacccctaaagtttacgaaaacatcatactttggttgaggagcattgttag |
4026772 |
T |
|
| Q |
329 |
acggtgccttttctgct |
345 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
4026773 |
acattgccttttctgct |
4026789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 355
Target Start/End: Complemental strand, 3953168 - 3952844
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3953168 |
aaacaggtattacaatctgtccatttttctctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatat |
3953069 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3953068 |
gatcaatgaaatgaacgatccttcaattgcttcaaaaattgaatg--atatgtcatctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt |
3952971 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
|||||||||||||| ||||||| | || || || |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| | |||||| |
|
|
| T |
3952970 |
tgaggaaaagccttagccaaatgaccaagaaagccgtggcggatgtcctctcccctaaagcttacaaaaacatcatactttgattcgggagaattgtttg |
3952871 |
T |
|
| Q |
329 |
acggtgccttttctgctacagccttca |
355 |
Q |
| |
|
|| || ||||||||||||| |||||| |
|
|
| T |
3952870 |
acattgtcttttctgctacacccttca |
3952844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 367
Target Start/End: Original strand, 3811932 - 3812266
Alignment:
| Q |
33 |
aggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgacc |
132 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811932 |
aggtattacaaaatgtccatatgtctctttgcactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgacc |
3812031 |
T |
|
| Q |
133 |
aatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcgag |
232 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3812032 |
aatgaaatgggagatccttccattgcttctacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaagaaaggcatttatttgctttcgag |
3812131 |
T |
|
| Q |
233 |
gaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacgg |
332 |
Q |
| |
|
|||||||| | ||||||||| || || | |||||||||||| |||||||||||||||||| |||||||||||||||| |||| | |||||| | |
|
|
| T |
3812132 |
aaaaagcctcagccaaatggctaagaaagaacttgcggatgtcctcgcccctaaagcttacaaaaacatcatactttgattgaggagtattgtttggcat |
3812231 |
T |
|
| Q |
333 |
tgccttttctgctacagccttcaatttaataacaa |
367 |
Q |
| |
|
| || ||||||||||| ||||||| ||| |||||| |
|
|
| T |
3812232 |
ttccctttctgctacacccttcaacttattaacaa |
3812266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 3916126 - 3915785
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| || |||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3916126 |
aaacaggtattacaatttgtgcatatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatat |
3916027 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
3916026 |
gatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatctcccctcttaagtttgtcatcaacaaaagcatttatttgcttt |
3915927 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgatt---ggggagcaatgt |
325 |
Q |
| |
|
|| |||||||||||||||||||| || || || ||||| |||| || ||||||||||||||| ||||||||||||| | | |||| | ||| |
|
|
| T |
3915926 |
tgacaaaaagccttaaccaaatggctaagaaagccgctacggatttccttgccactaaagcttacaaaaacatcatactttgaatgaggaggagtattgt |
3915827 |
T |
|
| Q |
326 |
ttgacggtgccttttctgctacagccttcaatttaataacaa |
367 |
Q |
| |
|
||||| || |||||| || ||| ||||||||||| |||||| |
|
|
| T |
3915826 |
ttgacattgtcttttccgcaacacccttcaatttattaacaa |
3915785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 33 - 356
Target Start/End: Original strand, 4220743 - 4221066
Alignment:
| Q |
33 |
aggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgacc |
132 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4220743 |
aggtattacaagttgtccatatttctctctgcactcaattatttttacaagttcttctaaacaccaatgtgaagaagcatagttttcagagaatatgacc |
4220842 |
T |
|
| Q |
133 |
aatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcgag |
232 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||| |||||| |
|
|
| T |
4220843 |
aatgaaatggatgatccttcaattgcttcaccaagtgaatgtgatatgtcatctcctttcttaagtttgtaatcaacaaagatatttatttgttttcgaa |
4220942 |
T |
|
| Q |
233 |
gaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacgg |
332 |
Q |
| |
|
|||||||| | ||| | || || || || | ||||| || | |||||||||||||||||| ||||| ||||||||| |||| | |||||||| |
|
|
| T |
4220943 |
taaaagcctcatacaatttgccaagaaagccgtcgcggacatcatttcccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacat |
4221042 |
T |
|
| Q |
333 |
tgccttttctgctacagccttcaa |
356 |
Q |
| |
|
||| ||||||||| || ||||||| |
|
|
| T |
4221043 |
tgctttttctgctgcacccttcaa |
4221066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 29 - 311
Target Start/End: Complemental strand, 3927120 - 3926838
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||| || |||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
3927120 |
aaacgggtattacaatttgtgcatatttctctttacactcaactattttcacaagttcttctaaacaccaatgtgaacaagcatatttttctgaaaatat |
3927021 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| ||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
3927020 |
gatcaacaaaatggatgatcctttgattgcttcaacaagtgaatctgatatgtcatctcccctgtgaagtttgtcatcaacaaaagcatttatttgcttt |
3926921 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttga |
311 |
Q |
| |
|
|| ||||||||||||||||||||| || || | || ||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
3926920 |
tgaagaaaagccttaaccaaatggctaagaaagctgctacgaatgtccttgccactaaagcttacaaaaacatcatactttga |
3926838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 3988126 - 3988464
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||| || ||||||||| ||||||| |||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
3988126 |
aaacaggtattataatctgtccacgatcctttttgcactcgattattttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatat |
3988225 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||| | | | || |||||| ||||||||| |||| |
|
|
| T |
3988226 |
gaccaatgaaattaacgagccttcaattgcttcaacaagtgaatgtttgatttcatctcccctcttaattatgttgtctacaaagacatttattttcttt |
3988325 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
|| ||||||||||||||||||||| || || || | |||||||||| ||||||||||| |||||| ||||||| |||||||||||||| || ||| |
|
|
| T |
3988326 |
tgacgaaaagccttaaccaaatggccaagaaagccgtctcggatgtccttgcccctaaagctcacaaaaacatcatattttgattggggagcgttggttg |
3988425 |
T |
|
| Q |
329 |
acggtgccttttctgctacagccttcaatttaataacaa |
367 |
Q |
| |
|
|| || ||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
3988426 |
acattgacttttctcctacacccttcaacttattaacaa |
3988464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 3962558 - 3962360
Alignment:
| Q |
33 |
aggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgacc |
132 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| | || | || | |||||||||||||||||||| |||||||||||||| | ||| ||||||| | |
|
|
| T |
3962558 |
aggtataacgatctgtccatatttctctctgcattgaagtgttgtaacaagttcttctaaacaccaacatgaagaagcatagtcgtgtgaaaatatgatc |
3962459 |
T |
|
| Q |
133 |
aatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcga |
231 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||| |||||||| ||||||| ||||||| |
|
|
| T |
3962458 |
aaggaaattaacgatccttcaattgctctgacaagtgattgtggtatttcatctcccctcttaagtttatcatctacaaaggcttttattttctttcga |
3962360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 253
Target Start/End: Original strand, 4019524 - 4019737
Alignment:
| Q |
40 |
acaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaa |
139 |
Q |
| |
|
||||| ||||||||||||||| |||| | || |||| | |||||||||| |||||||| ||||||||||||||| || ||||||||||| ||| |||| |
|
|
| T |
4019524 |
acaatttgtccatatttctctctgcattgaagtattgtgacaagttcttccaaacaccagcgtgaagaagcatagtcttgtgagaatatgatcaaggaaa |
4019623 |
T |
|
| Q |
140 |
tgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcgaggaaaagc |
239 |
Q |
| |
|
| |||||||||||| || |||||||| ||| ||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||| | ||||| |
|
|
| T |
4019624 |
ttaatgatccttcaattcctctgacaagtgattgtagtatttcatctcccctcttaagctcatcatcaacaaaggcttttattttctttcgacgtaaagc |
4019723 |
T |
|
| Q |
240 |
cttaaccaaatggc |
253 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
4019724 |
ctcaatcaaatggc |
4019737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 3825756 - 3825955
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||| | | |||| | || ||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
3825756 |
aaacaggtataacaatttgtccatatttctctctgcattgacgtattgtgacatgttcttctaaacaccaacatgaagaagcatagtcttgtgagaatat |
3825855 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| ||| ||||| ||||||||| || || |||||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
3825856 |
gatcaaggaaattaatgatccttcatttcctcttacaagtgattgtggtatttcatctcccctcttaagttcatcatcaacaaaggcttttatttccttt |
3825955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 3792676 - 3792804
Alignment:
| Q |
102 |
tgaagaagcatagttttctgagaatatgaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttc |
201 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||||| ||||||||| || || |||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
3792676 |
tgaagaagcatagtcttgtgagaatatgatcaaggaaattaatgatccttcatttcctcttacaagtgattgtggtatttcatctcccctcttaagttca |
3792775 |
T |
|
| Q |
202 |
tcatcaacaaaggcatttatttgctttcg |
230 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |
|
|
| T |
3792776 |
tcatcaacaaaggcttttatttcctttcg |
3792804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 4318299 - 4318238
Alignment:
| Q |
145 |
gatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatc |
206 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
4318299 |
gatcctttaattgcttcaacaaatgaatgtgatatttcatcccccctcttaagcttgtcatc |
4318238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 4026853 - 4026902
Alignment:
| Q |
403 |
tctataacattaacaaaatacaacaacaattaaaaaatgttactacttaa |
452 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
4026853 |
tctataacattaacaaaatacagcaaaatttaataaatgttactacttaa |
4026902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 3805793 - 3805874
Alignment:
| Q |
33 |
aggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatag |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||| | || |||| | ||||||| || ||||||||| ||||||||||||| |
|
|
| T |
3805793 |
aggtataacaatctgtccatatttctttctgcattgaagtattgtgacaagttcgtccaaacaccaacatgaagaagcatag |
3805874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 13399078 - 13399416
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13399078 |
aaacaggtattacaatttgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatat |
13399177 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgcttt |
228 |
Q |
| |
|
|| ||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
13399178 |
gatcaatgaaataaatgatccttcgattgcttcaaaaagtgaatgtgatatgtcatttcccctcttaagtttgtcgtcaacaaagacatttatttgcttt |
13399277 |
T |
|
| Q |
229 |
cgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttg |
328 |
Q |
| |
|
||| ||||||||||| |||||||| || || || ||| ||||||||||||||||||||||||||||| |||| || |||||||||||||| | ||| |
|
|
| T |
13399278 |
tgagaaaaagccttaaacaaatggccaagaaagccgtggtggatgtcctcacccctaaagcttacaaaaacatcgtatattgattggggagcatttcttg |
13399377 |
T |
|
| Q |
329 |
acggtgccttttctgctacagccttcaatttaataacaa |
367 |
Q |
| |
|
|| ||| ||||| |||| | ||||||| ||| |||||| |
|
|
| T |
13399378 |
acactgctttttcagctatacccttcaacttattaacaa |
13399416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 7069945 - 7070038
Alignment:
| Q |
91 |
aaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcat |
184 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||||||| | |||| |||||||||||||| |||||| |||||||| |||| |
|
|
| T |
7069945 |
aaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaattgcttcaaaaagtgactgtgatatttcat |
7070038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 7086949 - 7087105
Alignment:
| Q |
29 |
aaacaggtattacaatctgtccatatttctctttgcaatcaattattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatat |
128 |
Q |
| |
|
||||||| | || ||||||||||| ||||||| | || |||| ||||| |||| || || |||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
7086949 |
aaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatat |
7087048 |
T |
|
| Q |
129 |
gaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatc |
185 |
Q |
| |
|
||| |||||||| | |||| |||||| ||||||| |||||| |||| ||| ||||| |
|
|
| T |
7087049 |
gactaatgaaattgaagatgtttcaatagcttcaaaaagtgattgtgctatttcatc |
7087105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 7035480 - 7035412
Alignment:
| Q |
72 |
tattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaat |
140 |
Q |
| |
|
||||||| |||| || || ||||||||||||||||| ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
7035480 |
tattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaat |
7035412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 7028778 - 7028710
Alignment:
| Q |
72 |
tattttcgcaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaat |
140 |
Q |
| |
|
||||||| |||| || || ||||||||||||||||| ||| ||||| || ||||||||||||||||| |
|
|
| T |
7028778 |
tattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaat |
7028710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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