View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_23 (Length: 491)

Name: NF0743_low_23
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_23
NF0743_low_23
[»] chr6 (1 HSPs)
chr6 (11-491)||(11426549-11427031)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 11426549 - 11427031
Alignment:
Q  11 ataatataatcactttcaatggctaacaatggcccaacttaatcaaaggaacatttttatttatgttttt-gtgattacagaaatatacaaa-tttgaga 108  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  11426549 ataaaataatcactttcaatggctaacaatagcctaacttaatcaaaggaacatttttatttatgttttttgtgattacagaaatataaaaaatttgaga 11426648  T
Q  109 tcttcataatgatatcgcaaccacaatttcgactgcattttgtcgcaatataaaagttttgcagcaaacgatgcttgcagtttttaaaccttgaccgaca 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  11426649 tcttcagaatgatatcgcaaccacaatttcgactgcattttgtcgcaatataaaagttttgcagcaaacgatgattgcagtttttaaaccatgaccgaca 11426748  T
Q  209 tggatagaatgaaatctttaaagtgatgggttaagaggggatccc-aagatcatcacattgagacaagagtaactaataaagcattcacattaaattaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11426749 tggatagaatgaaatctttaaagtgatgggttaagaggggatcccaaagatcatcacattgagacaagagtaactaataaagcattcacattaaattag- 11426847  T
Q  308 cacactgcatcttaacaaaaaactt-agatattaagtttttgagtcatctcacttatataataatcaacatccnnnnnnncattcaatatgacactctca 406  Q
     ||||| |||||| | ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||        ||| ||||||||||||||||    
T  11426848 -acactccatcttgataaaaagcttgagatattaagtttttgagtcatctcacttatataatgatcaacatcttttttttcatccaatatgacactctca 11426946  T
Q  407 ctcacatttgaaatacaataataaaatgaagttagacaaaaaggaatgccttcaacgtagagctttccaaatatcatcagcttgt 491  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  11426947 ctcgcatttgaaatacaataataagatgaagttagacaaaaaggaatgccttcaatgtagagctttccaaatgtcatcagcttgt 11427031  T

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