View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_24 (Length: 483)
Name: NF0743_low_24
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_24 |
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| [»] scaffold0045 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Original strand, 17831298 - 17831763
Alignment:
| Q |
7 |
gccaaatttggccatttcatctccgccgcaatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaa |
106 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17831298 |
gccaaatctggccatttcatctccgccgcaaccgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaa |
17831397 |
T |
|
| Q |
107 |
tatgaaccgaaatctttcatcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccat |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831398 |
tatgaaccgaaatctttcgtcgtttctctctcccttcatcgacgatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccat |
17831497 |
T |
|
| Q |
207 |
cgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831498 |
cgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtt |
17831597 |
T |
|
| Q |
307 |
tcactttcatcccctagaatccttatggagtcaatcattcttcactattctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17831598 |
tcactttcatcccctagaatccttatggagtcaatcattcttcattattctcagtttatctccctctccaacgcttaagatgactcagattttaaaaaat |
17831697 |
T |
|
| Q |
407 |
cggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttcttcat |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17831698 |
cggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttcatcat |
17831763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 7135354 - 7135793
Alignment:
| Q |
8 |
ccaaatttggccatttcatctccgccgcaatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaat |
107 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7135354 |
ccaaatctggccatttcatctccgccgtaaccgtgattctgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaat |
7135453 |
T |
|
| Q |
108 |
atgaaccgaaatctttcatcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatc |
207 |
Q |
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|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||| |
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| T |
7135454 |
atgaaccgaaatcttccgtcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatctcaaacatccatcatacttaatgctctattccatc |
7135553 |
T |
|
| Q |
208 |
gttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7135554 |
gttgttcagatttgttgattttgtgaattttctctcaaggtaatagtt---------------------ttttgtttctctgaagtttagttctcagttt |
7135632 |
T |
|
| Q |
308 |
cactttcatcccctagaatccttatggagtcaatcattcttcactattctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaatc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
7135633 |
cactttcatcccctagaatccttatggagtcaatcattcttcactattctcattttttctccctctccaacgcttgagatgactaagattttcaaaaatc |
7135732 |
T |
|
| Q |
408 |
ggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttct |
468 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7135733 |
ggatgtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttct |
7135793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 226 - 353
Target Start/End: Complemental strand, 52525515 - 52525386
Alignment:
| Q |
226 |
ttttgtgaattttctctcaaggtaatagttttaccctttctatg--aattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctag |
323 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
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| T |
52525515 |
ttttgtgaattttctctcaaggtaatcgttttaccctttctatagaaattgaatttcgtttctctgaatttcagttctcagtttcactttcatcccctag |
52525416 |
T |
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| Q |
324 |
aatccttatggagtcaatcattcttcacta |
353 |
Q |
| |
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|| | |||||||||||||||||||| |||| |
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| T |
52525415 |
aacctttatggagtcaatcattctttacta |
52525386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 22292316 - 22292156
Alignment:
| Q |
124 |
catcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgtt |
223 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||| | |||||| ||||| | |||||||| |||||||||| | ||||| | |||||||||||| | |
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|
| T |
22292316 |
catcgttgctctctccgttcatcaacaaagcttctcccgttgctgaatctaagacatccattatgcttaatgctcccttccaccactgttcagatttgct |
22292217 |
T |
|
| Q |
224 |
gattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
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|||||| ||| |||||||||||||||| | ||| ||||||||||| |||||||| ||||| |
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| T |
22292216 |
aattttgcgaagtttctctcaaggtaatcgcttttccctttctatgtattgaattgtgttt |
22292156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 52525386 - 52525319
Alignment:
| Q |
401 |
aaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttct |
468 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52525386 |
aaaaattggaggtgttgaatgttcaggcattcccaaaattgttcatcttttcactttcaccttcttct |
52525319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 5658334 - 5658415
Alignment:
| Q |
203 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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|
| T |
5658334 |
ccatcgttgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
5658415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 14677558 - 14677485
Alignment:
| Q |
210 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
283 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| |||| |
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|
| T |
14677558 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
14677485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 31100415 - 31100334
Alignment:
| Q |
203 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| | ||||||||||||||||| ||||| |
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|
| T |
31100415 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagctttttcttttctatgaattgaattgtgttt |
31100334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
| Q |
204 |
catcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
|||||||||||| ||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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|
| T |
11176 |
catcgttgttcaaatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
11096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 10093043 - 10093117
Alignment:
| Q |
210 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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|
| T |
10093043 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
10093117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 33044989 - 33044908
Alignment:
| Q |
203 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| || ||||||||||||||||| ||||| |
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|
| T |
33044989 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccttttctatgaattgaattgtgttt |
33044908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 35639 - 35719
Alignment:
| Q |
203 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
283 |
Q |
| |
|
|||||| |||||||||||| | |||||| || ||| |||||||||||||| ||| |||||||||||||||||||| |||| |
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|
| T |
35639 |
ccatcgctgttcagatttgctaattttgcaaagtttatctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
35719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 37362273 - 37362214
Alignment:
| Q |
199 |
tattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtttta |
258 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| |||||||||||||||||| || |||||| |
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|
| T |
37362273 |
tattccatcattgttcatatttgtttattttatgaattttctctcaaggttatcgtttta |
37362214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 17682380 - 17682425
Alignment:
| Q |
239 |
ctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
284 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
17682380 |
ctctcaaggtaatcgtttttccctttctatgaattgaattgtgttt |
17682425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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