View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_25 (Length: 473)
Name: NF0743_low_25
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 276 - 463
Target Start/End: Original strand, 40472372 - 40472577
Alignment:
| Q |
276 |
agtgtgggtatgtatagatccttcatggatccttggcttggcatatttgaga------------------tttggttggtggaaattcttacaggaacat |
357 |
Q |
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| T |
40472372 |
agtgtgggtatgtatagatccttcatggatccttggcttggcatatttgagacttgagacttcattcagatttggttggtggaaattcttacaggaacat |
40472471 |
T |
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| Q |
358 |
aaaggccagctaaactagtctttttgtaccttaattatcccacccaaaattgtatatcatcttacaaacctaaatactgcaaattgaatgtctttattct |
457 |
Q |
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| T |
40472472 |
aaaggccagctaaactagtctttttgtaccttaattatcccacccaaaattgtatatcatcttacaaacctaaatactgcaaattgaatgtctttattct |
40472571 |
T |
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| Q |
458 |
cctatg |
463 |
Q |
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|||||| |
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| T |
40472572 |
cctatg |
40472577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 40472208 - 40472299
Alignment:
| Q |
112 |
ttctaaaatcattttttcttgcaatttgtaatgaaacattatctttttgttacttagtgttgttcattgaacatgatgaaacataatctgtt |
203 |
Q |
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| T |
40472208 |
ttctaaaatcattttttcttgcaatttgtaatgaaacattatctttttgttacttagtgttgttcattgaacatgatgaaacataatctgtt |
40472299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 40472136 - 40472190
Alignment:
| Q |
62 |
ttaaggttgtgtttggattaaataaaatggaat---tatacttgtttaattagtt |
113 |
Q |
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| T |
40472136 |
ttaaggttgtgtttggattaaataaaatggaattaatatacttgtttaattagtt |
40472190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 48767521 - 48767473
Alignment:
| Q |
6 |
accatggcacttcttctcatagtagctccaaccaatttgccggcaacag |
54 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48767521 |
accaaggcacttcttctcatagtagctccaaccaatttgccggccacag |
48767473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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