View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_26 (Length: 464)
Name: NF0743_low_26
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 208 - 458
Target Start/End: Original strand, 14173852 - 14174102
Alignment:
| Q |
208 |
caccttagttatggaaatgccatggtcatctctgtagcgtttaaaagttgcaaaaagctgagtcttgctctttgtagtaaggattctaatggcttcttcg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14173852 |
caccttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttca |
14173951 |
T |
|
| Q |
308 |
tgatttccttttttctctttgattgattcatgaagaatgtcagcttcattttttgccaatttcggatttatctcagcaccgccatatctaaacgaggtca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173952 |
tgatttccttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaatttcggatttatctcagcaccgccatatctaaacgaggtca |
14174051 |
T |
|
| Q |
408 |
tcaatccaaccaacagctgccgagaaaaacaaaacatattcttcatctcac |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14174052 |
ccaatccaaccaacagctgccgagaaaaacaaaacatattcttcatttcac |
14174102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 14173645 - 14173801
Alignment:
| Q |
1 |
acaaattgaaagtcagaaactaattaacctattcatagtacttcttatggtcattgatgcatcgaatcgtagtgtgcaatgccttgtgaaaatcgtcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14173645 |
acaaattgaaagtcagaaactaattaaccttttcatagtacttcttatggtcattgatgcatcgaatcgtagtgtgcaatgccttgtgaaaatcatcaga |
14173744 |
T |
|
| Q |
101 |
tgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtgaacatgg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173745 |
tgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtgaacatgg |
14173801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 428
Target Start/End: Original strand, 14152395 - 14152607
Alignment:
| Q |
216 |
ttatggaaatgccatggtcatctctgtagcgtttaaaagttgcaaaaagctgagtcttgctctttgtagtaaggattctaatggcttcttcgtgatttcc |
315 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || || |||||||| ||| |||||||||||| ||||| ||||||| || || ||||||| ||||| |
|
|
| T |
14152395 |
ttatagaaaagccatgatcatctcggtaacggttgaaagttgccttaagttgagtcttgctccttgtaataaggatcctgataacttcttcaatgtttcc |
14152494 |
T |
|
| Q |
316 |
ttttttctctttgattgattcatgaagaatgtcagcttcattttttgccaatttcggatttatctcagcaccgccatatctaaacgaggtcatcaatcca |
415 |
Q |
| |
|
||| || | ||||| | ||||||||||| |||||||||| ||||||||| | ||||| || ||| |||| |||||||||| ||| ||| ||||||| |
|
|
| T |
14152495 |
tttcttgtttttgacagcctcatgaagaatatcagcttcatgttttgccaaaattggattgatttcaacaccatcatatctaaatgagctcaccaatcca |
14152594 |
T |
|
| Q |
416 |
accaacagctgcc |
428 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
14152595 |
accaaaagctgcc |
14152607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 14166917 - 14167068
Alignment:
| Q |
236 |
tctctgtagcgtttaaaagttgcaaaaagctgagtcttgctctttgtagtaaggattctaatggcttcttcgtgatttccttttttctctttgattgatt |
335 |
Q |
| |
|
||||||||||| || || || |||| ||||| || |||||| ||||||| | ||| || ||||||||||| || ||||||| |||||||| | ||| | |
|
|
| T |
14166917 |
tctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatccttatggcttcttcatggcttcctttcttctctttcactgact |
14167016 |
T |
|
| Q |
336 |
catgaagaatgtcagcttcattttttgccaatttcggatttatctcagcacc |
387 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||| ||||| |||||| |||| |
|
|
| T |
14167017 |
catgaagaattccagcttcagtttgcgccaattttggattgatctcatcacc |
14167068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 427
Target Start/End: Complemental strand, 5180996 - 5180778
Alignment:
| Q |
209 |
accttagttatggaaatgccatggtcatctctgtagcgtttaaaagttgcaaaaagctgagtcttgctctttgtagtaaggattctaatggcttcttcgt |
308 |
Q |
| |
|
|||||| | ||||| |||||||| ||||| || || || || |||||||| | ||| |||||||||||| |||| ||||| || |||||| ||||||| | |
|
|
| T |
5180996 |
accttactaatggagatgccatgttcatccctataacggttgaaagttgccacaagttgagtcttgctccttgtggtaagaatcctaatgacttcttcat |
5180897 |
T |
|
| Q |
309 |
gatttccttttttctctttgattgattcatgaagaatgtcagcttcattttttgccaatttcggatttatctcagcaccgccatatctaaacgaggtcat |
408 |
Q |
| |
|
|| ||||| || || |||| |||||||| ||| | ||| ||| ||| ||||||||| | ||| |||||| | || |||| ||||| ||| ||| |
|
|
| T |
5180896 |
tgttgcctttcttttccttgacactttcatgaataatattagcctcagtttgtgccaattttgcattgatctcatctccctcatacctaaatgagctcac |
5180797 |
T |
|
| Q |
409 |
caatccaaccaacagctgc |
427 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
5180796 |
caatccaaccaaaagctgc |
5180778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University