View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_27 (Length: 461)
Name: NF0743_low_27
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 30 - 450
Target Start/End: Complemental strand, 10662319 - 10661899
Alignment:
| Q |
30 |
gttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaac |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662319 |
gttggcaatctctcttttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaac |
10662220 |
T |
|
| Q |
130 |
tcttgattaataacaactccatgacaggggagattcctacaaacttgtcaagttgctctgatcttgaagtcttatacttacagagaaatcatttggttgg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662219 |
tcttgattaataacaactccatgacaggggagattcctacaaacttgtcaagttgctctgatcttgaagtcttatacttacagagaaatcatttggttgg |
10662120 |
T |
|
| Q |
230 |
taaaataccaattggcatcagctctcttcataaactacaaatgttggggatttcaaacaacaatctaacctgaagaattccacccttcataggaaatctt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10662119 |
taaaataccaattggcatcagctctcttcataaactacaaatgttggggatttcaaacaacaatctaaccggaagaattccacccttcataggaaatctt |
10662020 |
T |
|
| Q |
330 |
tcatccctaattgtgctttcagtgggtaataatcacttagagggagaaattccggtagaaatctgcagcctcaaaaacttgacagggttggcattggctg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662019 |
tcatccctaattgtgctttcagtgggtaataatcacttagagggagaaattccggtagaaatctgcagcctcaaaaacttgacagggttggcattggctg |
10661920 |
T |
|
| Q |
430 |
tcaacaaactacgtggttcat |
450 |
Q |
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||||||||||||||||||||| |
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| T |
10661919 |
tcaacaaactacgtggttcat |
10661899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 7190977 - 7191360
Alignment:
| Q |
30 |
gttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaac |
129 |
Q |
| |
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|||||||||||||| ||||||| || |||||||||||| ||||||||||||| || ||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
7190977 |
gttggcaatctctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaac |
7191076 |
T |
|
| Q |
130 |
tcttgattaataacaactccatgacaggggagattcctacaaacttgtcaagttgctctgatcttgaagtcttatactt-acagagaaatcatttggttg |
228 |
Q |
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|| | | | | | |||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||| || | |||||||| | ||| |
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| T |
7191077 |
tcgtactcattgataactccttgacaggggagattcctacaaacttgacgagttgctctaatcttgaattcttatacttgactg-gaaatcatcttattg |
7191175 |
T |
|
| Q |
229 |
gtaaaataccaattggcatcagctctcttcataaactacaaatgttggggatttcaaacaacaatctaacctgaagaattccacccttcataggaaatct |
328 |
Q |
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|||||||||||||||| || ||||||||||| || || ||| |||||| ||||||||| |||||| ||||| ||||||| ||| | |||||||| ||||| |
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| T |
7191176 |
gtaaaataccaattggaataagctctcttcaaaagcttcaagtgttggagatttcaaaaaacaatttaaccggaagaataccaacgttcatagggaatct |
7191275 |
T |
|
| Q |
329 |
ttcatccctaattgtgctttcagtgggtaataatcacttagagggagaaattccggtagaaatctgcagcctcaaaaacttgaca |
413 |
Q |
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| T |
7191276 |
ttcatggctagctattctttcagtgggtgataacctcttagagggagacattccacgagaaatatgcagcctcaaaaacttgaca |
7191360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 33 - 413
Target Start/End: Complemental strand, 10654433 - 10654053
Alignment:
| Q |
33 |
ggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaactct |
132 |
Q |
| |
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||||||||||| ||||||| || |||| ||||||||| |||||||||||||| || ||||| ||||||||||||| |||| ||||||||| ||||| |
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| T |
10654433 |
ggcaatctctcttttttgacaaacctcatccttgcaaaaaatagtttctttggaaatatccctcatgaactcggtcagttgtcacgattgcagcaactcg |
10654334 |
T |
|
| Q |
133 |
tgattaataacaactccatgacaggggagattcctacaaacttgtcaagttgctctgatcttgaagtcttatacttacagagaaatcatttggttggtaa |
232 |
Q |
| |
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| | || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| || ||||||| |
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| T |
10654333 |
ttctctccaataactcaatgacaggggagattcctacaaacttgacaagttgctctgatcttgaatacttattcttatctggaaatcatctgattggtaa |
10654234 |
T |
|
| Q |
233 |
aataccaattggcatcagctctcttcataaactacaaatgttggggatttcaaacaacaatctaacctgaagaattccacccttcataggaaatctttca |
332 |
Q |
| |
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|||||||||| | || |||||||||||||| || || |||||| | || |||| |||||| ||||| ||||||||| ||| | |||||||||| ||||| |
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| T |
10654233 |
aataccaattcgaattagctctcttcataagcttcagttgttggagcttacaaataacaatttaaccggaagaattcaaccatccataggaaatatttca |
10654134 |
T |
|
| Q |
333 |
tccctaattgtgctttcagtgggtaataatcacttagagggagaaattccggtagaaatctgcagcctcaaaaacttgaca |
413 |
Q |
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|| |||| | | | ||| ||| || ||||||||||||||||| || || |||||| |||||||||||| |||||||| |
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| T |
10654133 |
tctctaactattatatcaatggatatgaatcacttagagggagatataccacaagaaatgtgcagcctcaaacacttgaca |
10654053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 10563002 - 10563068
Alignment:
| Q |
30 |
gttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccac |
96 |
Q |
| |
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|||||||||||| | |||||||||| |||| |||||| |||||||||||| | ||| ||||||||| |
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| T |
10563002 |
gttggcaatctcacctttttgataaatctcgaccttggaaacaatagtttttctggagaaatcccac |
10563068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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