View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_29 (Length: 453)
Name: NF0743_low_29
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Original strand, 7948447 - 7948869
Alignment:
| Q |
2 |
ttatcagctgctactgatccatcaactccaggatcactcttcacactcagctttgttttgcttcttttaggtcctttgtttgtttatcttgttcccgaag |
101 |
Q |
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| T |
7948447 |
ttatcagctgctactgatccatcaactccaggatcactcttcacactcagctttgttttgcttcttttaggtcctttgtttgtttatcttgttcccgaag |
7948546 |
T |
|
| Q |
102 |
ataatgttgtcgaggttggattgcaggctgtggttgctttgatctgtgttgttggtggttctgctggttttgctggttcaagttttgtatccaacttgca |
201 |
Q |
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| T |
7948547 |
ataatgttgtcgaggttggattgcaggctgtggttgctttgatctgtgttgttggtggttctgctggttttgctggttcaagttttgtatccaacttgca |
7948646 |
T |
|
| Q |
202 |
gaaaataaaataaatttgatttctctcttatggtttttatattagtcctttgttatcttattgtattatgatgtgaagagtgaagaaataatgaatgaat |
301 |
Q |
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| T |
7948647 |
gaaaataaaataaatttgatttctctcttatggtttttatattagtcctttgttatcttattgtattatgatgtgaaaagtgaagaaataatgaatgaat |
7948746 |
T |
|
| Q |
302 |
tcattaattgatttgtgaatgattcaaagatttatatatggaaatggaacaaacagaaaatgtaactaaataaacagaattaactgattctgttattaga |
401 |
Q |
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| T |
7948747 |
tcattgattgatttgtgaatgattcaaagatttatatatggaaatggaacaaacagaaaatgtaactaaataaacagaattaactgattctgttattaga |
7948846 |
T |
|
| Q |
402 |
tttaacatttttgtgttctctat |
424 |
Q |
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| T |
7948847 |
tttaacatttttatgttctctat |
7948869 |
T |
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