View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_3 (Length: 718)
Name: NF0743_low_3
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 30 - 701
Target Start/End: Original strand, 25697934 - 25698605
Alignment:
| Q |
30 |
aggagagatgatgagcttgttggatcttctgcaatggattgttgtggaagaaaggttgaatgtcctaaggctagtttggtttcagggtatgatactgaac |
129 |
Q |
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| T |
25697934 |
aggagagatgatgagcttgttggatcttctgcaatggattgttgtggaagaaaggttgaatgtcctaaggctagtttggtttcagggtatgatactgaac |
25698033 |
T |
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| Q |
130 |
ctggttttgattattgttcgtgttcgcgaaaaaataatattattgttgataatgttgatgtggaatgtgaatgctcaacttcttatgaagatggtgattg |
229 |
Q |
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| T |
25698034 |
ctggttttgattattgttcgtgttcgcgaaaaaataatattattgttgataatgttgatgtggaatgtgaatgctcaacttcttatgaagatggtgattg |
25698133 |
T |
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| Q |
230 |
ccatgatatgtctttttgtataggtgatagtgaaattaggtgtagtaggtattttatggcgtcgctttcgaggccttttatgacaatgttgtatggtgga |
329 |
Q |
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| T |
25698134 |
ccatgatatgtctttttgtataggtgatagtgaaattaggtgtagtaggtattttatggcgtcgctttcgaggccttttatgacaatgttgtatggtgga |
25698233 |
T |
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| Q |
330 |
tttgttgagtctaggagggagaagataattttttctcttaatgatttttctgttgaggtgatgagggcggttgaggtttttagtagaaccaagaggttga |
429 |
Q |
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| T |
25698234 |
tttgttgagtctaggagggagaagataattttttctcttaatgatttttctgttgaggtgatgagggcggttgaggtttttagtagaaccaagaggttga |
25698333 |
T |
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| Q |
430 |
gtcagtttgggaatgatcttgtgctagggatgctttcttttgcgaataggttttgttgtacggatatgaaagctgcttgtgatgctcatttggctgcttt |
529 |
Q |
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| T |
25698334 |
gtcagtttgggaatgatcttgtgctagggatgctttcttttgcgaataggttttgttgtacggatatgaaagctgcttgtgatgctcatttggctgcttt |
25698433 |
T |
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| Q |
530 |
ggtgttggatatggatgatgcgttgttgttgattgagtacggattggaggagatggcgtatttgctagtggcagcttgcttgcaggtgtttcttagagag |
629 |
Q |
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| T |
25698434 |
ggtgttggatatggatgatgcgttgttgttgattgagtacggattggaggagatggcgtatttgctagtggcagcttgcttgcaggtgtttcttagagag |
25698533 |
T |
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| Q |
630 |
ctccctagctcgatgcaacgtttgagtgtgatgagattgttttgtagtgtagagggtagagatagattggca |
701 |
Q |
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| T |
25698534 |
ctccctagctcgatgcaacgtttgagtgttatgagattgttttgtagtgtagagggtagagatagattggca |
25698605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 4182387 - 4182290
Alignment:
| Q |
234 |
gatatgtctttttgtataggtgatagtgaaattaggtgtagtaggtattttatggcgtcgctttcgaggccttttatgacaatgttgtatggtggatt |
331 |
Q |
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| T |
4182387 |
gatatatcgttttgtatcggtgatgatgaaattaggtgtggtaggttcaatatggcttcgctttcgaggccgtttaagacaatgttgtatggtggatt |
4182290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 4182567 - 4182520
Alignment:
| Q |
63 |
atggattgttgtggaagaaaggttgaatgtcctaaggctagtttggtt |
110 |
Q |
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| T |
4182567 |
atggattgttgtggaaggaatattgaatgtcctaaggctactttggtt |
4182520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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