View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_30 (Length: 451)
Name: NF0743_low_30
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 2122029 - 2122323
Alignment:
| Q |
13 |
atactatctggttgaccctctgcatgttgcaaaaccatctgttagcatgtctctcaaatcgtcacaaaacacttaac---ttgagaagaaagacatttcc |
109 |
Q |
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| T |
2122029 |
atactatctggttgaccctctgcatgttgcaaaaccatttgttagcatgtctctcttattgtcacaaaacacttaacagcttgacaagaaagacatttcc |
2122128 |
T |
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| Q |
110 |
aaaatgttacttaccaacagccacctttgtaaggccaggaagatcaatgagtgtcaagttaacaactgcaaaggtccaagcaatcattagtaagttgaaa |
209 |
Q |
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| T |
2122129 |
aaaatgttacttaccaacagccacctttgtaaggccaggaagatcaataagtgtcaagttaacaactgcaaaggtccaagcagtcattagtaagttgaaa |
2122228 |
T |
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| Q |
210 |
aacaatggacaaataaaaat-------aatccacgccacaattttactcggcattctctcaaacacaccattgggagaata-gtactgatatgaa |
296 |
Q |
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| T |
2122229 |
aacaatgaacagataaaaataaaaataaatccacgccacagttttactcgccattctttctaacacaccattgggagaatatgtactgaaatgaa |
2122323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 366
Target Start/End: Original strand, 2122347 - 2122375
Alignment:
| Q |
338 |
gagttggagttgtgtgtggtactggtgat |
366 |
Q |
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| T |
2122347 |
gagttggagttgtgtgtggtactggtgat |
2122375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 42038291 - 42038233
Alignment:
| Q |
121 |
taccaacagccacctttgtaaggccaggaagatcaatgagtgtcaagttaacaactgca |
179 |
Q |
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| T |
42038291 |
tacctacagcgaccttcgtaagcccaggaagatcgatgagtgtcaagttaacaactgca |
42038233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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