View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_31 (Length: 446)
Name: NF0743_low_31
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 95 - 425
Target Start/End: Complemental strand, 3744689 - 3744366
Alignment:
| Q |
95 |
agtgtatgtgtgatggtctttgggggcagaagagtaccaggttgttttttaaggtcgtgcttgtgtgatggtatttggtttgatgtaataaaaattagta |
194 |
Q |
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| T |
3744689 |
agtgtatgtgtgatggtctttgggggcagaagagtactaggttgttttttaaggtcgtgcttgtgtgatggtatttggtttgatgtaataaaaattagta |
3744590 |
T |
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| Q |
195 |
attttgatttgcaatgcagttattctgtttctgtgattgtgattgttcttgttctttgttcttgattttgaattagtaattgtggattaagagagggaaa |
294 |
Q |
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| T |
3744589 |
attttgatttgcaatgcagttattctgtttctgtgattttgattgttcttgttctt-------gattttgaattagtaattgtggattaagagagagaaa |
3744497 |
T |
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| Q |
295 |
tatgatgtatttgattaaatttagcatatgttttcttgttttaagttggatattttattcactatgtcttgctacttttgacgcgataaatccttctacg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
3744496 |
tatgatgtatttgattaaatttagcatatgttttcttgttttaagttggatattttattcgctatgtcttgctacttatgacgcgataaatccttctacg |
3744397 |
T |
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| Q |
395 |
gaacgagctttgggctagcataattgatgat |
425 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
3744396 |
gaacgagctttgagctagcataattgatgat |
3744366 |
T |
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