View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_34 (Length: 436)
Name: NF0743_low_34
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 394
Target Start/End: Complemental strand, 19855952 - 19855587
Alignment:
| Q |
29 |
acctagggctaagctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtggggtttggtttctttgctttgtttggga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
19855952 |
acctagggctaagctaatgttagtgtttgaatttgccaaacttttgtgagaaagttgatcatggatcatgtggggtttggtttatttgctttgtttggca |
19855853 |
T |
|
| Q |
129 |
aaagggtatttgcttagtagggttatgatttcatagg-ttttttctatttagaatctaattttaaatgcaatttatgttttgttgttgaccgtttaggtt |
227 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19855852 |
aaagggtatt-gctaagtagggttatgatttcatagggttttttctatttagaatctaattttaaatgcaattcatgttttgttgttgaccgtttaggtt |
19855754 |
T |
|
| Q |
228 |
tattagttaagtgggtgttgggagttttaatttactttgaaccgttgctaattaagtagtagatgtttggttttagtccaatgtcttctttctctatatg |
327 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19855753 |
tatcagtgaagtgggtgttgggagttttaatttactttgaaccgttgctaattaagtagtagatgtttggttttggtccaatgtcttctttctctatatg |
19855654 |
T |
|
| Q |
328 |
ctgtaaatgggtgcttttaatttctaatgataatcatgtcatgtttccttcttatctatgtgtcctt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19855653 |
ctgtaaatgggtgcttttaatttctaatgataatcatgtcatctttccttcttatctatgtgtcctt |
19855587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 8748705 - 8748767
Alignment:
| Q |
41 |
gctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
8748705 |
gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgggg |
8748767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 32830147 - 32830085
Alignment:
| Q |
41 |
gctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
32830147 |
gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgggg |
32830085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 35081257 - 35081319
Alignment:
| Q |
41 |
gctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| ||||| ||| ||||||||||| |
|
|
| T |
35081257 |
gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatgaatcttgtgggg |
35081319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University