View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_35 (Length: 434)
Name: NF0743_low_35
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 347772 - 347824
Alignment:
| Q |
96 |
aaggggaatccatgttacaaatttttcaagattgagattcagatgggtttcca |
148 |
Q |
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| T |
347772 |
aaggggaatccatgttacaaatttttcaagattgagattcagatgggtttcca |
347824 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 347889 - 347937
Alignment:
| Q |
235 |
tttaacacaatggttgttattggctaaaacataggatccgatgttttga |
283 |
Q |
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| T |
347889 |
tttaacacaatggttgttattggctaaaacataggatccgatgttttga |
347937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 347823 - 347861
Alignment:
| Q |
191 |
catagttagtctaccacataagtgaatatgctcgacttt |
229 |
Q |
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| T |
347823 |
catagttagtctaccacataagttaagatgctcgacttt |
347861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 33317548 - 33317497
Alignment:
| Q |
141 |
ggtttccaggtttgcctaaaggttaggtgccatcaaacaatgccaacgaaca |
192 |
Q |
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| T |
33317548 |
ggtttccatgtttgcaaagaggttaggtgccatcaaacaatgccaacaaaca |
33317497 |
T |
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