View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_36 (Length: 434)
Name: NF0743_low_36
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 425
Target Start/End: Complemental strand, 43970510 - 43970102
Alignment:
| Q |
30 |
gaaaaaactgagcatgaaagcatgcatcattgaaatttcggcaacatttatccctgaaagaatccagaatggaatgataaaataattagagtgtgagaag |
129 |
Q |
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| T |
43970510 |
gaaaaaactgagcatgaaagcatgcatcattgaaatttcggcaacatttatccc-gaaagaatccagaatggaatgataaaataattagagtgtgagaag |
43970412 |
T |
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| Q |
130 |
aaaccattgggagaatgggaaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattg |
229 |
Q |
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| T |
43970411 |
aaactattggaagaatggaaaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattg |
43970312 |
T |
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| Q |
230 |
gaagcaaacaatgtgagaattccttaaagaaatagggaatcaga-gattgt---------------accgtcaacgtagctttgtagtgtgtcgttcatt |
313 |
Q |
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| T |
43970311 |
gaagcaaacaatgtgagaattccttaaagaaatagggaatcagaggtttgtaccgtcaacaatgcaaccgtcaacgtagctttgtagtgcgtcgttcatt |
43970212 |
T |
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| Q |
314 |
ggccaccacagtctccttctttacttacgtctctctattgccacttcagtgtagtgtagttgtcgtagactcaaagtcgtttatactatatacattattt |
413 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
43970211 |
ggccac--cagtctccttctttatttacgtctctctattgccacttcagtgtagtgtagttgtcgtagacccaaagtcgtttatactatatacattactt |
43970114 |
T |
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| Q |
414 |
ctaaagtattat |
425 |
Q |
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| T |
43970113 |
ctaaagtattat |
43970102 |
T |
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