View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_38 (Length: 433)
Name: NF0743_low_38
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 46 - 429
Target Start/End: Original strand, 327909 - 328291
Alignment:
| Q |
46 |
cactctcgttataaacaacagacaatatagaggtatgtgacagccttccaaggttttatattgaaattgtacattaatgcaattgatttggccgcgattg |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
327909 |
cactctcgttataaacaacagacaatatagaggtatgtgacagccttccaaggttttatattgaaattgtacattaatgcaattgatgtggccgcgattg |
328008 |
T |
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| Q |
146 |
cagttgcaaatatgattgtcagaatctaaaacattaatattgcacctgaaactacagtttaaaactttgaatgatcactatttaattttgtctctattgt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
328009 |
cagttgcaaatatgattgtcagaatctaaaacattaatattgcacctgaaactacagtttaaaactttgaatgatcactatttaattttgtctctattgt |
328108 |
T |
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| Q |
246 |
tgtaatatcatattttgttttgaactggtatttaggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagcca |
345 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
328109 |
tgtaatatcatattttgttttgaactggta-ttaggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagcca |
328207 |
T |
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| Q |
346 |
tctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctacgagatgaagtattatctacc |
429 |
Q |
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| T |
328208 |
tctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctaggagatgaaatattatctacc |
328291 |
T |
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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 27412630 - 27412548
Alignment:
| Q |
287 |
tgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagccatctatttgtttaactccaggtctt |
369 |
Q |
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|||||| | |||| || ||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
27412630 |
tgtcaagaccagcggttctcaaggcaatgtgtgcaggtttccaagagaccactgaaccatcaatttgcttaactccaggtctt |
27412548 |
T |
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