View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_40 (Length: 427)
Name: NF0743_low_40
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 74 - 422
Target Start/End: Complemental strand, 57952 - 57604
Alignment:
| Q |
74 |
gttacaattgaagaagtatgcaatccttctacttatcattaatgttaattagagatttaagattcaaaattatggttaaataattgtaagattaaaaagg |
173 |
Q |
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| T |
57952 |
gttacaattgaagaagtatgcaatccttctacttatcattaatgttaattagagatttaagattcaaaattatggttaaataattgtaagattaaaaagg |
57853 |
T |
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| Q |
174 |
aactcaccaaaattctgccatttcacttgttggtatttgttttgataatgactcataaaaaatccttagaggttctttctgtcaataaaatggcattaaa |
273 |
Q |
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| T |
57852 |
aactcaccaaaattctgccatttcacttgttggtatttgttttgataatgactcataaaaaatccttagaggttctttctgtcaataaaatggcattaaa |
57753 |
T |
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| Q |
274 |
aatcacacaaatgagtatgaattgaatctcatataaacacattaaagttataacttttttgaaaattcaattggtttttgacagaaatcaaatacctctt |
373 |
Q |
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| T |
57752 |
aatcacacaaatgagtatgaattgaatctcatataaacacattaaagttataacttttttgaaaattcaattggtttttgacacaaatcaaatacctctt |
57653 |
T |
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| Q |
374 |
ctgggggatcatgtttctgcccaggaagactatagactttcttctctct |
422 |
Q |
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| T |
57652 |
ctgggggatcatgtttctgcccaggaagactatagactttcttctctct |
57604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 51216391 - 51216307
Alignment:
| Q |
174 |
aactcaccaaaattctgccatttcacttgttggtatttgttttgataatgactcataaaaaatccttagaggttctttctgtcaa |
258 |
Q |
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| T |
51216391 |
aactcaccaaaattcagccatttcacttgttggtatctgttttgacaatgactcatagaatatcctcaggggttctttctgtcaa |
51216307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 51216229 - 51216173
Alignment:
| Q |
367 |
acctcttctgggggatcatgtttctgcccaggaagactatagactttcttctctctc |
423 |
Q |
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| T |
51216229 |
acctcttcaggaggatcatgtttctgaccaggcaaactgtagactttcctctctctc |
51216173 |
T |
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