View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_43 (Length: 411)
Name: NF0743_low_43
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_43 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 62 - 396
Target Start/End: Complemental strand, 7739636 - 7739302
Alignment:
| Q |
62 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaa |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
7739636 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaactctttcagcaaactccaaagactacaaa |
7739537 |
T |
|
| Q |
162 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7739536 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaacaataagttaac |
7739437 |
T |
|
| Q |
262 |
cggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
361 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||| |
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| T |
7739436 |
cggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggattgagcaaa |
7739337 |
T |
|
| Q |
362 |
tttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739336 |
tttgcaaagagttcgtttgatcataataaatgcct |
7739302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 62 - 396
Target Start/End: Complemental strand, 7727318 - 7726984
Alignment:
| Q |
62 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaa |
161 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || || || ||||||||||||| ||||||| |||||||||||| |
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|
| T |
7727318 |
tttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaactctttcagcaaactcaaaagactacaaa |
7727219 |
T |
|
| Q |
162 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaac |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
7727218 |
aacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatc |
7727119 |
T |
|
| Q |
262 |
cggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
361 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7727118 |
cggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
7727019 |
T |
|
| Q |
362 |
tttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727018 |
tttgcaaagagttcgtttgatcataataaatgcct |
7726984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 62 - 396
Target Start/End: Complemental strand, 7731478 - 7731144
Alignment:
| Q |
62 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaa |
161 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||| | ||||||| |||||||||||| |
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|
| T |
7731478 |
tttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactcaaaagactacaaa |
7731379 |
T |
|
| Q |
162 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaac |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
7731378 |
aacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatc |
7731279 |
T |
|
| Q |
262 |
cggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
361 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||| |||| |
|
|
| T |
7731278 |
cggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggattgagcaag |
7731179 |
T |
|
| Q |
362 |
tttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731178 |
tttgcaaagagttcgtttgatcataataaatgcct |
7731144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 62 - 396
Target Start/End: Complemental strand, 7713801 - 7713467
Alignment:
| Q |
62 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaa |
161 |
Q |
| |
|
||||||||||| || ||||||| | | |||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
7713801 |
tttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaa |
7713702 |
T |
|
| Q |
162 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaac |
261 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||| | ||||| || || ||| | |||||| || | || ||| |||||||||| ||||| |||||| | |
|
|
| T |
7713701 |
atctcgaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatc |
7713602 |
T |
|
| Q |
262 |
cggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
361 |
Q |
| |
|
||||| |||||||||||| ||| | ||||| ||||||||| ||||| || || ||||||||||| || ||||||||||| ||||||||||||| |||| |
|
|
| T |
7713601 |
cggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaag |
7713502 |
T |
|
| Q |
362 |
tttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
7713501 |
tttgcaaagagttcgtttgagcataataaatgcct |
7713467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 62 - 396
Target Start/End: Complemental strand, 7699456 - 7699122
Alignment:
| Q |
62 |
tttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaa |
161 |
Q |
| |
|
|||||| |||| || ||||||| | | |||||||||||||||||||| |||||||||||||| || ||||||||||| | |||||||||||||||||||| |
|
|
| T |
7699456 |
tttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaa |
7699357 |
T |
|
| Q |
162 |
aactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaac |
261 |
Q |
| |
|
| || ||||||||||||||||| ||||||||| | |||||| | || |||||| | |||||| || || ||||| |||||||||||||||| |||||| | |
|
|
| T |
7699356 |
atctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatc |
7699257 |
T |
|
| Q |
262 |
cggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaag |
361 |
Q |
| |
|
||| ||||||||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||| || ||| |||||||||| ||| |
|
|
| T |
7699256 |
cggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaag |
7699157 |
T |
|
| Q |
362 |
tttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
||| |||| | |||||| |||||||||||||| |
|
|
| T |
7699156 |
tttaacaagaatgtgtttgagcataataaatgcct |
7699122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 114 - 396
Target Start/End: Original strand, 12908070 - 12908352
Alignment:
| Q |
114 |
taactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctagg |
213 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| ||| | | | || ||| | ||| ||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
214 |
ccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaac |
313 |
Q |
| |
|
|| |||||| ||||| | ||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| | ||||||||||||| |||||||| || |
|
|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
314 |
gtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcct |
396 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||||||||||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcct |
12908352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 48767521 - 48767473
Alignment:
| Q |
6 |
accatggcacttcttctcatagtagctccaaccaatttgccggcaacag |
54 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48767521 |
accaaggcacttcttctcatagtagctccaaccaatttgccggccacag |
48767473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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