View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_46 (Length: 411)
Name: NF0743_low_46
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 84 - 292
Target Start/End: Original strand, 744831 - 745039
Alignment:
| Q |
84 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccgg |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
744831 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagccgcgcccgg |
744930 |
T |
|
| Q |
184 |
tccaaaattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
744931 |
tccaaaattcatgtactcaccataatacaaagtttttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
745030 |
T |
|
| Q |
284 |
aacatatat |
292 |
Q |
| |
|
||||||||| |
|
|
| T |
745031 |
aacatatat |
745039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 276
Target Start/End: Complemental strand, 41574059 - 41573872
Alignment:
| Q |
89 |
atgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccggtccaa |
188 |
Q |
| |
|
|||||||||||||| || ||||||| || |||| || || ||||| ||||||||||| ||||| || || ||||| || |||||| | || |||||| |
|
|
| T |
41574059 |
atgaattgggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccat |
41573960 |
T |
|
| Q |
189 |
aattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccat |
276 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||||| || ||||||||| ||||||| |||||||| ||||| |
|
|
| T |
41573959 |
aattcatgtattcaccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccat |
41573872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University