View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_51 (Length: 400)

Name: NF0743_low_51
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_51
NF0743_low_51
[»] chr4 (7 HSPs)
chr4 (155-265)||(53998840-53998950)
chr4 (303-359)||(53998988-53999044)
chr4 (301-335)||(25063376-25063410)
chr4 (301-334)||(11314053-11314086)
chr4 (303-335)||(37219861-37219893)
chr4 (303-335)||(42671898-42671930)
chr4 (301-335)||(17655660-17655694)
[»] chr8 (5 HSPs)
chr8 (303-338)||(30834859-30834894)
chr8 (301-335)||(3890416-3890450)
chr8 (301-335)||(37132482-37132516)
chr8 (306-335)||(1886643-1886672)
chr8 (303-335)||(24844664-24844696)
[»] chr3 (7 HSPs)
chr3 (356-395)||(48767482-48767521)
chr3 (301-335)||(40328061-40328095)
chr3 (303-335)||(47738341-47738373)
chr3 (303-342)||(46919117-46919156)
chr3 (301-335)||(36864834-36864868)
chr3 (306-335)||(33839765-33839794)
chr3 (303-335)||(24343779-24343811)
[»] chr6 (2 HSPs)
chr6 (301-335)||(29693675-29693709)
chr6 (301-330)||(34238889-34238918)
[»] chr2 (2 HSPs)
chr2 (301-335)||(22592942-22592976)
chr2 (301-334)||(27847791-27847824)
[»] chr7 (2 HSPs)
chr7 (303-335)||(29737374-29737406)
chr7 (301-342)||(37476882-37476922)
[»] chr1 (3 HSPs)
chr1 (301-335)||(52064379-52064413)
chr1 (306-335)||(27523062-27523091)
chr1 (303-335)||(44690825-44690857)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 53998840 - 53998950
Alignment:
Q  155 gtatttgtgttcttagtaaatgcatcaaaacttgacagaattcttagatgttgtgtgacgaaaaattgcaattgatcacaaccaaccaaaacttgacacg 254  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53998840 gtatttgtgttcttagtaaatgcatcaatacttgacacaattcttagatgttgtgtgacgaaaaattgcaattgatcacaaccaaccaaaacttgacatg 53998939  T
Q  255 tcatcatacac 265  Q
    |||||||||||    
T  53998940 tcatcatacac 53998950  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 53998988 - 53999044
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53998988 tagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaa 53999044  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 25063376 - 25063410
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  25063376 gctagatatcaagaatgattttatcaagaaagatt 25063410  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 11314053 - 11314086
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagat 334  Q
    ||||||||||||||||||||||||||||||||||    
T  11314053 gctagatatcaagaatgattttatcaagaaagat 11314086  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 37219893 - 37219861
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||    
T  37219893 tagatatcaagaatgattttatcaagaaagatt 37219861  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 42671930 - 42671898
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||    
T  42671930 tagatatcaagaatgattttatcaagaaagatt 42671898  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 17655694 - 17655660
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||| |||||||||||||||||||||||||    
T  17655694 gctagatattaagaatgattttatcaagaaagatt 17655660  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 30834859 - 30834894
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagattaaa 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  30834859 tagatatcaagaatgattttatcaagaaagattaaa 30834894  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 3890416 - 3890450
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  3890416 gctagatatcaagaatgattttatcaagaaagatt 3890450  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 37132482 - 37132516
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  37132482 gctagatatcaagaatgattttatcaagaaagatt 37132516  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 1886672 - 1886643
Alignment:
Q  306 atatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||||||||||||||||||||||||    
T  1886672 atatcaagaatgattttatcaagaaagatt 1886643  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 24844664 - 24844696
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||| ||||||||||||||||||||||    
T  24844664 tagatatcaataatgattttatcaagaaagatt 24844696  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 48767482 - 48767521
Alignment:
Q  356 gcaaattggttggagctactatgagaagaagtgccatggt 395  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  48767482 gcaaattggttggagctactatgagaagaagtgccttggt 48767521  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 40328095 - 40328061
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  40328095 gctagatatcaagaatgattttatcaagaaagatt 40328061  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 47738373 - 47738341
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||    
T  47738373 tagatatcaagaatgattttatcaagaaagatt 47738341  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 342
Target Start/End: Complemental strand, 46919156 - 46919117
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagattaaataat 342  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  46919156 tagatatcaagaatgattttatcaaaaaagattcaataat 46919117  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 36864834 - 36864868
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||||||||||||||||||||| |||||||    
T  36864834 gctagatatcaagaatgattttatcaaaaaagatt 36864868  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 33839794 - 33839765
Alignment:
Q  306 atatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||||||||||||||||||||||||    
T  33839794 atatcaagaatgattttatcaagaaagatt 33839765  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 24343811 - 24343779
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||||||||||||||||||| |||||||    
T  24343811 tagatatcaagaatgattttatcaaaaaagatt 24343779  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 29693709 - 29693675
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  29693709 gctagatatcaagaatgattttatcaagaaagatt 29693675  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 34238889 - 34238918
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaa 330  Q
    ||||||||||||||||||||||||||||||    
T  34238889 gctagatatcaagaatgattttatcaagaa 34238918  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 22592976 - 22592942
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  22592976 gctagatatcaagaatgattttatcaagaaagatt 22592942  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 27847824 - 27847791
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagat 334  Q
    |||||||||||||||| |||||||||||||||||    
T  27847824 gctagatatcaagaataattttatcaagaaagat 27847791  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 29737406 - 29737374
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||||||||||||||||||||||||    
T  29737406 tagatatcaagaatgattttatcaagaaagatt 29737374  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 37476882 - 37476922
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagattaaataat 342  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  37476882 gctagatatcaagaatga-tttatcaagaaagatttaataat 37476922  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 52064379 - 52064413
Alignment:
Q  301 gctagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||||| ||||||||||||||||||||||    
T  52064379 gctagatatcaaaaatgattttatcaagaaagatt 52064413  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 27523062 - 27523091
Alignment:
Q  306 atatcaagaatgattttatcaagaaagatt 335  Q
    ||||||||||||||||||||||||||||||    
T  27523062 atatcaagaatgattttatcaagaaagatt 27523091  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 44690825 - 44690857
Alignment:
Q  303 tagatatcaagaatgattttatcaagaaagatt 335  Q
    |||||||||| ||||||||||||||||||||||    
T  44690825 tagatatcaataatgattttatcaagaaagatt 44690857  T

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