View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_54 (Length: 393)

Name: NF0743_low_54
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_54
NF0743_low_54
[»] chr2 (33 HSPs)
chr2 (1-378)||(8800550-8800925)
chr2 (170-250)||(32596012-32596092)
chr2 (129-255)||(33019135-33019262)
chr2 (170-248)||(5533017-5533095)
chr2 (102-250)||(6327052-6327202)
chr2 (75-151)||(15928518-15928594)
chr2 (208-255)||(16518837-16518884)
chr2 (170-255)||(33502258-33502340)
chr2 (148-255)||(43501123-43501229)
chr2 (178-255)||(44439283-44439360)
chr2 (186-329)||(9143012-9143154)
chr2 (172-248)||(42982567-42982643)
chr2 (218-257)||(40401620-40401659)
chr2 (208-250)||(680274-680316)
chr2 (209-255)||(15220840-15220886)
chr2 (272-322)||(15928371-15928421)
chr2 (208-253)||(1976845-1976890)
chr2 (178-255)||(4894136-4894213)
chr2 (206-255)||(10644660-10644709)
chr2 (73-137)||(10126019-10126083)
chr2 (194-254)||(44810420-44810480)
chr2 (178-257)||(3352105-3352184)
chr2 (169-255)||(33047561-33047647)
chr2 (146-255)||(42740973-42741082)
chr2 (75-120)||(3716750-3716795)
chr2 (275-324)||(13238927-13238976)
chr2 (170-255)||(13912808-13912893)
chr2 (208-257)||(28206736-28206785)
chr2 (187-232)||(39008968-39009013)
chr2 (208-253)||(42382399-42382444)
chr2 (274-330)||(42515950-42516007)
chr2 (274-330)||(5055246-5055302)
chr2 (86-118)||(16518715-16518747)
[»] chr6 (32 HSPs)
chr6 (72-324)||(4910830-4911082)
chr6 (75-255)||(25195345-25195524)
chr6 (130-255)||(3482026-3482152)
chr6 (172-244)||(17225875-17225947)
chr6 (73-250)||(28052872-28053052)
chr6 (130-255)||(5724609-5724735)
chr6 (191-257)||(8860546-8860612)
chr6 (170-255)||(29338576-29338659)
chr6 (178-255)||(1485125-1485202)
chr6 (130-250)||(16540087-16540208)
chr6 (186-255)||(34620923-34620992)
chr6 (186-255)||(34748360-34748429)
chr6 (170-255)||(46267-46354)
chr6 (191-255)||(882728-882792)
chr6 (179-255)||(957602-957678)
chr6 (274-330)||(3605728-3605784)
chr6 (208-255)||(3289804-3289850)
chr6 (178-255)||(434216-434293)
chr6 (212-245)||(947628-947661)
chr6 (178-254)||(34027397-34027473)
chr6 (208-255)||(8856366-8856413)
chr6 (75-222)||(19601457-19601599)
chr6 (272-322)||(21455946-21455997)
chr6 (166-255)||(34910964-34911049)
chr6 (75-120)||(2002580-2002625)
chr6 (75-120)||(2008453-2008498)
chr6 (166-255)||(4907980-4908068)
chr6 (177-255)||(6653842-6653922)
chr6 (178-255)||(31305826-31305903)
chr6 (273-322)||(32217399-32217448)
chr6 (186-255)||(32888936-32889005)
chr6 (186-255)||(34026596-34026667)
[»] chr8 (35 HSPs)
chr8 (80-255)||(37684335-37684511)
chr8 (73-235)||(13384653-13384816)
chr8 (92-255)||(32927834-32927998)
chr8 (92-244)||(38868439-38868593)
chr8 (169-255)||(26100125-26100211)
chr8 (169-255)||(35495010-35495096)
chr8 (148-255)||(32994221-32994329)
chr8 (212-255)||(9461517-9461560)
chr8 (207-258)||(27218821-27218872)
chr8 (130-243)||(36200120-36200237)
chr8 (169-255)||(4662882-4662968)
chr8 (274-324)||(41408266-41408316)
chr8 (186-255)||(38868780-38868849)
chr8 (218-255)||(43492216-43492253)
chr8 (178-250)||(7533827-7533898)
chr8 (191-255)||(32101115-32101179)
chr8 (274-322)||(36779467-36779515)
chr8 (186-250)||(40769351-40769415)
chr8 (274-325)||(29970878-29970929)
chr8 (207-255)||(32767445-32767495)
chr8 (209-255)||(2764448-2764494)
chr8 (208-254)||(18356069-18356115)
chr8 (191-257)||(32736504-32736570)
chr8 (170-255)||(33184158-33184244)
chr8 (169-255)||(38335840-38335926)
chr8 (208-253)||(13929678-13929723)
chr8 (190-235)||(32681303-32681348)
chr8 (69-118)||(32994341-32994390)
chr8 (186-255)||(35495297-35495366)
chr8 (218-258)||(3279039-3279079)
chr8 (222-258)||(8693839-8693875)
chr8 (178-238)||(13418815-13418875)
chr8 (191-255)||(16972043-16972107)
chr8 (208-252)||(37451942-37451986)
chr8 (218-254)||(42458311-42458347)
[»] chr5 (26 HSPs)
chr5 (140-248)||(6951291-6951400)
chr5 (92-239)||(31906201-31906349)
chr5 (75-250)||(18851066-18851242)
chr5 (95-250)||(42858052-42858209)
chr5 (72-243)||(22226227-22226399)
chr5 (186-255)||(9184994-9185063)
chr5 (133-240)||(9818717-9818826)
chr5 (93-255)||(10860333-10860497)
chr5 (274-325)||(2868332-2868383)
chr5 (209-255)||(14671085-14671131)
chr5 (191-257)||(34443017-34443083)
chr5 (89-246)||(36289974-36290132)
chr5 (172-233)||(15368396-15368457)
chr5 (73-241)||(28110431-28110599)
chr5 (148-255)||(38845441-38845550)
chr5 (190-254)||(10898762-10898825)
chr5 (170-250)||(39097267-39097347)
chr5 (218-256)||(11577599-11577637)
chr5 (190-243)||(6949673-6949726)
chr5 (73-240)||(11648005-11648171)
chr5 (208-253)||(12208814-12208859)
chr5 (222-255)||(36927666-36927699)
chr5 (277-322)||(38265061-38265106)
chr5 (186-219)||(42529519-42529552)
chr5 (207-255)||(4306570-4306618)
chr5 (93-161)||(6806313-6806381)
[»] chr4 (32 HSPs)
chr4 (75-255)||(35064988-35065169)
chr4 (147-255)||(8604601-8604710)
chr4 (170-250)||(32818354-32818434)
chr4 (169-257)||(53713538-53713626)
chr4 (94-248)||(53913563-53913718)
chr4 (72-255)||(33456296-33456478)
chr4 (169-249)||(45011894-45011974)
chr4 (178-234)||(52965854-52965910)
chr4 (169-255)||(21691191-21691277)
chr4 (95-239)||(39386578-39386723)
chr4 (208-261)||(55927743-55927796)
chr4 (196-248)||(43868183-43868235)
chr4 (191-247)||(44278954-44279010)
chr4 (208-247)||(16552014-16552053)
chr4 (93-254)||(22683806-22683969)
chr4 (179-255)||(16644008-16644083)
chr4 (191-244)||(42694502-42694557)
chr4 (186-250)||(45694651-45694715)
chr4 (276-322)||(1616515-1616561)
chr4 (274-324)||(5025582-5025632)
chr4 (209-255)||(33843771-33843817)
chr4 (274-324)||(39000530-39000580)
chr4 (73-118)||(2326928-2326973)
chr4 (75-120)||(21691335-21691380)
chr4 (186-243)||(26911798-26911855)
chr4 (95-255)||(39733619-39733777)
chr4 (186-255)||(47144251-47144320)
chr4 (75-120)||(49138950-49138995)
chr4 (129-216)||(30357491-30357579)
chr4 (169-257)||(33347147-33347235)
chr4 (186-226)||(47297985-47298025)
chr4 (218-258)||(52342025-52342065)
[»] scaffold0168 (1 HSPs)
scaffold0168 (75-250)||(31751-31930)
[»] chr3 (28 HSPs)
chr3 (170-250)||(31708223-31708303)
chr3 (170-255)||(31013039-31013124)
chr3 (178-252)||(40147832-40147906)
chr3 (178-253)||(35264392-35264467)
chr3 (166-235)||(52364068-52364137)
chr3 (193-257)||(43661883-43661947)
chr3 (274-330)||(44225633-44225689)
chr3 (170-241)||(4526153-4526224)
chr3 (170-224)||(39054105-39054159)
chr3 (165-255)||(46853513-46853603)
chr3 (179-255)||(33791984-33792061)
chr3 (186-255)||(35253446-35253515)
chr3 (279-324)||(53078431-53078476)
chr3 (186-235)||(54173314-54173363)
chr3 (191-251)||(36302225-36302285)
chr3 (211-258)||(4401350-4401397)
chr3 (218-253)||(5406973-5407008)
chr3 (170-257)||(49356370-49356457)
chr3 (220-254)||(7262885-7262919)
chr3 (272-322)||(21261223-21261273)
chr3 (208-258)||(46551244-46551294)
chr3 (73-119)||(52141361-52141407)
chr3 (218-255)||(30958105-30958142)
chr3 (218-255)||(30973917-30973954)
chr3 (226-255)||(41591332-41591361)
chr3 (221-253)||(31130038-31130070)
chr3 (170-254)||(31492788-31492870)
chr3 (191-255)||(41596128-41596192)
[»] chr1 (42 HSPs)
chr1 (130-255)||(38797609-38797734)
chr1 (92-255)||(28083867-28084031)
chr1 (171-255)||(34915088-34915172)
chr1 (170-252)||(3016183-3016265)
chr1 (133-256)||(1514326-1514450)
chr1 (169-255)||(7524133-7524219)
chr1 (191-248)||(2555943-2556000)
chr1 (169-246)||(11049270-11049347)
chr1 (191-240)||(30850393-30850442)
chr1 (71-239)||(47321902-47322070)
chr1 (169-322)||(30557524-30557674)
chr1 (274-330)||(4347066-4347122)
chr1 (129-232)||(7790644-7790748)
chr1 (186-238)||(24587949-24588001)
chr1 (208-255)||(35961427-35961474)
chr1 (73-120)||(36780232-36780279)
chr1 (190-257)||(37733611-37733678)
chr1 (87-248)||(3416017-3416179)
chr1 (218-255)||(213260-213297)
chr1 (210-255)||(18325087-18325132)
chr1 (186-243)||(28267900-28267957)
chr1 (170-255)||(32370010-32370095)
chr1 (191-255)||(45660584-45660648)
chr1 (217-252)||(1416203-1416238)
chr1 (192-235)||(35548832-35548875)
chr1 (173-244)||(50569633-50569704)
chr1 (172-246)||(10324926-10325000)
chr1 (170-244)||(14644718-14644792)
chr1 (75-117)||(30557441-30557483)
chr1 (186-248)||(34721826-34721888)
chr1 (210-248)||(47053465-47053503)
chr1 (208-257)||(1233364-1233413)
chr1 (191-255)||(2099666-2099731)
chr1 (172-255)||(20720839-20720919)
chr1 (218-255)||(24697577-24697614)
chr1 (172-243)||(26373535-26373603)
chr1 (218-255)||(48548993-48549030)
chr1 (274-322)||(13344865-13344913)
chr1 (207-255)||(27962095-27962143)
chr1 (284-324)||(36447660-36447700)
chr1 (274-322)||(40352483-40352531)
chr1 (208-256)||(52263625-52263673)
[»] chr7 (26 HSPs)
chr7 (78-324)||(28724963-28725209)
chr7 (130-255)||(22195844-22195970)
chr7 (169-250)||(42816452-42816533)
chr7 (171-255)||(40491600-40491684)
chr7 (188-247)||(39956266-39956325)
chr7 (186-255)||(25156237-25156306)
chr7 (178-255)||(27571891-27571968)
chr7 (218-255)||(40561737-40561774)
chr7 (191-254)||(40795969-40796032)
chr7 (148-238)||(41386811-41386902)
chr7 (176-255)||(41788343-41788422)
chr7 (192-255)||(45557408-45557471)
chr7 (193-243)||(32295228-32295278)
chr7 (169-247)||(35772278-35772356)
chr7 (274-330)||(31625560-31625616)
chr7 (170-250)||(32683582-32683662)
chr7 (208-255)||(17111904-17111951)
chr7 (208-258)||(9480585-9480635)
chr7 (217-255)||(12306791-12306829)
chr7 (73-143)||(29163417-29163487)
chr7 (276-330)||(32683694-32683748)
chr7 (228-258)||(41010035-41010065)
chr7 (186-255)||(22310438-22310507)
chr7 (197-249)||(525980-526032)
chr7 (227-255)||(33853463-33853491)
chr7 (186-258)||(38123642-38123714)
[»] scaffold0361 (1 HSPs)
scaffold0361 (186-255)||(14093-14162)
[»] scaffold0024 (1 HSPs)
scaffold0024 (169-254)||(23573-23658)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 8800925 - 8800550
Alignment:
Q  1 ttagatgttacaagatcgtattaaacttttcttttggtgtannnnnnnncttcttcatatttttaaagggttataattgattttggaggtatagaattga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||         || ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  8800925 ttagatgttacaagatcgtattaaacttttctcttggtgtatttt-----ttgttc-tatttttagagggttataattgattttggaggtatagaattga 8800832  T
Q  101 ttctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttgtaacttttgaatctataattgatttt 200  Q
    |||||||||||||||||||| |||||| |||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8800831 ttctgatatgtttggttgttgttgattataattgaccatgtctccataattgattatatttgagatatgatttgtaacttttgaatctataattgatttt 8800732  T
Q  201 aacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattaca-tttnnnnnnnnnttacttttaactaaaatcaattctacaa 299  Q
    || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||         |||||||||| |||||||||||||||||    
T  8800731 aatatacaaatttataattcaactcacttttacatgaacgtatccaaacataaattacatttttaaaaaaaattacttttaattaaaatcaattctacaa 8800632  T
Q  300 aattgattatatcaaaatcaattttttcc---acgcaaccaaatatacgtttgatggtggttgaaatctcaagaaccgcata 378  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  8800631 aattgattatatcaaaatcaattttttccacaacgcaaccaaatatacgtttggtggtggttgaaatctcaagaaccacata 8800550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 32596012 - 32596092
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||||||||| ||| ||||||||||    
T  32596012 atttgtaacttttgattctaaaattgatttttacatacaaattcataattcaactcacttttacataaatatatccaaaca 32596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 33019262 - 33019135
Alignment:
Q  129 taattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcac 227  Q
    ||||||||| || ||||| ||||||||||| |||| | ||  ||||||| ||||||  | || |||||||||| ||| ||||||||||| ||||||||||    
T  33019262 taattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcac 33019163  T
Q  228 ttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||| ||||||||| ||||    
T  33019162 ttttacatgaatgcatccaaacacaaat 33019135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 5533095 - 5533017
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    ||||||| ||||||| |||  ||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||||    
T  5533095 atttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactcacatttacatgaacgtatccaaa 5533017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 6327202 - 6327052
Alignment:
Q  102 tctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgaga-tatgatttgtaacttttgaatctataattgatttt 200  Q
    ||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||| ||||||| | ||  |||||||  |||||| |||| |||| ||| |    
T  6327202 tctgacatgtttggttgttgttgattaaaattgattatgtttctagaattgattctacttgaaactaaaatttgtagtttttgattctaaaattaattct 6327103  T
Q  201 aacatataaatttata-attcaactcacttttacatgaatgtatccaaaca 250  Q
    |||||||||||||| |  ||||||||||||||| | | ||| |||||||||    
T  6327102 aacatataaatttaaagtttcaactcacttttagacggatgcatccaaaca 6327052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 15928594 - 15928518
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataatt 151  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||||||| |||| |  |||||||||| |||||||||||    
T  15928594 aattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgattatatctctataatt 15928518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 16518837 - 16518884
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  16518837 aaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 16518884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 33502258 - 33502340
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||| |||| |||||||||| ||| | | ||||||| ||||||||||||||||   |||||||||||||| ||||    
T  33502258 atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaactcacttttac---aatgtatccaaacacaaat 33502340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 43501123 - 43501229
Alignment:
Q  148 aattgattatacttgaga-tatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 246  Q
    |||||||| ||||||| | || |||||||| ||||||| | || |||||||| ||||| | ||  ||||||||||||||| |||||||||||||||| ||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaa--ttataattcaactcagttttacatgaatgtataca 43501220  T
Q  247 aacataaat 255  Q
    |||| ||||    
T  43501221 aacacaaat 43501229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 44439283 - 44439360
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| |||| ||||||||||||||   ||||||||  |||||||||||||||||| ||  |||||||||||||||    
T  44439283 cttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaat 44439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 9143012 - 9143154
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnnnttacttttaactaa 285  Q
    ||||||||| ||||| ||| | | ||| |||||||||||||| ||||||||||||||| |||||| |||  |  |||         |||| |||||||||    
T  9143012 tctataattaattttcacacacatattcataattcaactcacatttacatgaatgtattcaaacaaaaaccat-ttttagtcaaaattacatttaactaa 9143110  T
Q  286 aatcaattctacaaaattgattatatcaaaatcaattttttcca 329  Q
    ||||||||||||| |||  ||| ||| |||||||||||||||||    
T  9143111 aatcaattctacataatcaattttattaaaatcaattttttcca 9143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 42982567 - 42982643
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    ||||| ||||||| || | |||||||||| ||| | ||||||||  | |||||||||||||||||||||||||||||    
T  42982567 ttgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatccaaa 42982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 40401659 - 40401620
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  40401659 ttcaactgacttttacatgaatgtatccaaacataaatta 40401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 680316 - 680274
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  680316 aaatttagaattcaactcacttttacatgaatgtatgcaaaca 680274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 15220886 - 15220840
Alignment:
Q  209 aatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaat 15220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 15928421 - 15928371
Alignment:
Q  272 ttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15928421 ttacttttaaccaaaatcaattctacagaattaattataccaaaatcaatt 15928371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 1976890 - 1976845
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataa 253  Q
    ||||||||  || |||||||||||||||||||||||||||||||||    
T  1976890 aaatttattgttgaactcacttttacatgaatgtatccaaacataa 1976845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 4894213 - 4894136
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| ||||||||||||| | | |   |||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  4894213 cttttgattctataattgattattatactcaaatttattattcaagtcacttttaaatgaatgtatctaaacataaat 4894136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 10644660 - 10644709
Alignment:
Q  206 ataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  10644660 ataaatttatagttcaactcacttttatataaatgtatccaaacttaaat 10644709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 10126019 - 10126083
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgatt 137  Q
    ||||||||||| |||| ||| |||||||||||||||| |||||||||| | || || ||||||||    
T  10126019 ataattgatttgggagatattgaattgattctgatatatttggttgttgtcgaatgaaattgatt 10126083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 44810420 - 44810480
Alignment:
Q  194 tgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||||||||  |||||||| |||||| |||||||||  ||||| ||||||||||||||    
T  44810420 tgattttaacattcaaatttatcattcaagtcacttttatttgaatatatccaaacataaa 44810480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 3352105 - 3352184
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    ||||||| ||||||||||||||| ||| | ||||||||  ||||||| |||||||||| ||  | || ||||||||||||    
T  3352105 cttttgattctataattgattttcacacacaaatttatgtttcaacttacttttacataaaattgtcaaaacataaatta 3352184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 33047647 - 33047561
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||| | || || ||||||| ||| | |||||||   |||| ||||||||||||| |||||||||||||| ||||    
T  33047647 gatttgtagcttttgattttagaaatgattttcacagaaaaatttacggttcacctcacttttacataaatgtatccaaacacaaat 33047561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 42740973 - 42741082
Alignment:
Q  146 ataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatc 244  Q
    |||||||||| ||||||| | || |||||||| ||||||| |||| |||||||||| |||   |||||||   | |||||||||||||||| |||||||     
T  42740973 ataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat-aatgtatt 42741071  T
Q  245 caaacataaat 255  Q
    |||||| ||||    
T  42741072 caaacacaaat 42741082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 3716795 - 3716750
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||||| ||||||||||||| ||||||| || ||||||||||    
T  3716795 aattgattttagaggtatagaattaattctgacatatttggttgtt 3716750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 13238927 - 13238976
Alignment:
Q  275 cttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    ||||||||||||||||||| ||||||||  |||  |||||||||||||||    
T  13238927 cttttaactaaaatcaattttacaaaatgaattcaatcaaaatcaatttt 13238976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 13912808 - 13912893
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| |||| | |||| |||| ||||| ||| | |||||||   ||||||||| |||||||||| |||||||||||| ||||    
T  13912808 atttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcatttttacatgattgtatccaaacacaaat 13912893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 28206736 - 28206785
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||| |||||||  ||||||||||||||||| | ||||||||||||    
T  28206736 aaatttattattcaacaaacttttacatgaatgtacctaaacataaatta 28206785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 39009013 - 39008968
Alignment:
Q  187 ctataattgattttaacatataaatttataattcaactcactttta 232  Q
    |||| ||||| ||| ||| |||||||||||||||||||||||||||    
T  39009013 ctatgattgaattttacacataaatttataattcaactcactttta 39008968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 42382444 - 42382399
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataa 253  Q
    |||||||||||||| ||||||||| ||| ||| |||||||||||||    
T  42382444 aaatttataattcacctcacttttccataaatttatccaaacataa 42382399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 42516007 - 42515950
Alignment:
Q  274 acttttaactaaaatcaattcta-caaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||||||||||||||||  |||| |  |||||||||||||||||||| |||||    
T  42516007 acttttaactaaaatcaattctctcaaactcaattatatcaaaatcaattttctccac 42515950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 5055246 - 5055302
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||| |||||||||||| ||||||| |||  ||||||||||| |||| ||||    
T  5055246 acttttaaccaaaatcaattctgcaaaattaattcaatcaaaatcaaattttgccac 5055302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 16518715 - 16518747
Alignment:
Q  86 gaggtatagaattgattctgatatgtttggttg 118  Q
    ||||| |||||||||||||||||||||||||||    
T  16518715 gaggtgtagaattgattctgatatgtttggttg 16518747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 72 - 324
Target Start/End: Original strand, 4910830 - 4911082
Alignment:
Q  72 tataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatga 170  Q
    ||||||||||| || | || ||||||||||||||| ||||||||||||  |  |||  |||||||| || ||| | |||||||| ||||||| | |||||    
T  4910830 tataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatga 4910929  T
Q  171 tttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnn 270  Q
    |||||| ||||||| |||| |||||||||| ||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||| || |||            
T  4910930 tttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaatcac-ttttagtcaga 4911028  T
Q  271 nttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
     ||||||||||| ||||| ||||||| | |||  ||| ||||||||||||||||    
T  4911029 attacttttaaccaaaattaattctagagaatcaattctatcaaaatcaatttt 4911082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 25195524 - 25195345
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttg 174  Q
    |||||||| |||| || || |||||||||||| ||||||||||| ||| || | ||||||||| || |||   |||||||| ||||||| |   ||||||    
T  25195524 aattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttga-agcggatttg 25195426  T
Q  175 taacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||  |||| | ||||||||||||||| | | | ||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  25195425 tagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatccaaacacaaat 25195345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 3482026 - 3482152
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcact 228  Q
    |||||||| ||||| || |||||||||||||||| | || |||||||| | ||||| | || |||||||||| ||| | || |||||| ||||||| |||    
T  3482026 aattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttact 3482125  T
Q  229 tttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||| |||||| ||||    
T  3482126 tttacatgaatgtattcaaacacaaat 3482152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 17225875 - 17225947
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatc 244  Q
    ||||| ||||||| |||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 28052872 - 28053052
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgat 171  Q
    ||||||||||  | || |||| |||||||||||| ||||||  |||||||  | | ||||||||| ||||| || ||||||||||||||| |||||  ||    
T  28052872 ataattgattcagaagttataaaattgattctgacatgtttaattgttatcaagtataattgattgtgtctatagaattgattatacttgaagatagaat 28052971  T
Q  172 ttgtaacttttgaatctataattgattttaacatat--aaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    |||||  | || | |||| |||||||||| ||||||  | ||||||| || || |||||||||||| |||||||| |||||    
T  28052972 ttgtagttattaattctaaaattgattttcacatatacatatttatagtttaagtcacttttacataaatgtatcaaaaca 28053052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 5724735 - 5724609
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcact 228  Q
    |||||||| || ||| | |||||||| ||||||| | || |||||||||||||| | ||||||||||||||| ||| | |||| ||| ||| ||||||||    
T  5724735 aattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatatcatttaactcact 5724636  T
Q  229 tttacatgaatgtatccaaacataaat 255  Q
    |||| |||||  ||| |||||| ||||    
T  5724635 tttatatgaacatattcaaacacaaat 5724609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 8860546 - 8860612
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||||| ||| ||||||||||  |||||||||||||| |||||||||||| ||||| ||||||    
T  8860546 aattgattttgacacataaatttatggttcaactcacttttgcatgaatgtatctaaacacaaatta 8860612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 29338659 - 29338576
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||| ||| | || |||||||| |||||||  ||||| |||||||| |||||||||||| ||| |||||||||||||||    
T  29338659 atttgtaacttatgattttagaattgattctaacata--aatttttaattcaattcacttttacataaatatatccaaacataaat 29338576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 1485202 - 1485125
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| |||| ||||||||||||||   ||||||||  |||||||||||||||||| | ||||||||||| |||||    
T  1485202 cttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 16540087 - 16540208
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcact 228  Q
    |||||||| |||||| | |||||||| ||||||| | || |||||||| ||||||| | |  |||||| ||| || || | ||||||| || ||||||||    
T  16540087 aattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaactcact 16540186  T
Q  229 tttacatgaatgtatccaaaca 250  Q
    ||||||| ||||||||||||||    
T  16540187 tttacatcaatgtatccaaaca 16540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 34620923 - 34620992
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||||||||| |||   ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  34620923 tctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaat 34620992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 34748360 - 34748429
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||||||||| |||   ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  34748360 tctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaat 34748429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 46354 - 46267
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaattt--ataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| ||||||| |||| ||| |||| ||||| | ||||||  |||||||||||||||||| || ||||||||||||||| ||||    
T  46354 atttgtagcttttgattctagaatagattctaacaaacaaatttttataattcaactcacttttccacgaatgtatccaaacacaaat 46267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 882728 - 882792
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| ||||  ||||||||  || ||||||||||| |||||||||||||||||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaat 882792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 957678 - 957602
Alignment:
Q  179 ttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| || ||||| |||||| ||| | ||| ||| |||| |||||| ||||||||||||||||||||||||||||    
T  957678 ttttgattccataatcgatttttacacacaaacttaaaatttaactcatttttacatgaatgtatccaaacataaat 957602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 3605784 - 3605728
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||||| |||||    
T  3605784 acttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattttgtccac 3605728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 3289804 - 3289850
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3289804 aaatttataattcaactcacttttacat-aatgtatccaaacacaaat 3289850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 434293 - 434216
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| | || |||||||||| | | ||||||||| | ||||||||||||||||| |||| |||||||||| ||||    
T  434293 cttttgattttagaattgatttttatacataaatttaaatttcaactcacttttacacgaatatatccaaacacaaat 434216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 947628 - 947661
Alignment:
Q  212 ttataattcaactcacttttacatgaatgtatcc 245  Q
    ||||||||||||||||||||||||||||||||||    
T  947628 ttataattcaactcacttttacatgaatgtatcc 947661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 34027473 - 34027397
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||| |||| |||||||||| |||   |||||||| |||||||||||| |||||||||| |||| || ||||||    
T  34027473 cttttgattctagaattgatttttacactcaaatttattattcaactcactcttacatgaatatatctaaccataaa 34027397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 8856366 - 8856413
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| ||||    
T  8856366 aaatttatgtttcaactcactttcacatgaatgtatccaaacacaaat 8856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 19601599 - 19601457
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttg 174  Q
    ||||||||||| |||| || ||||||||||| |||| || |||| | | ||||  |||||||| |||||  | |||||||| ||| |     | ||||||    
T  19601599 aattgattttgaaggtgtacaattgattctggtatgcttagttgctttcgattagaattgattctgtctaaagaattgattctacct-----aggatttg 19601505  T
Q  175 taacttttgaatctataattgattttaacatataaatttataattcaa 222  Q
    || ||||||| ||||||| ||||||| ||| ||||||||||| |||||    
T  19601504 tagcttttgattctataactgatttttacaaataaatttatagttcaa 19601457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 21455946 - 21455997
Alignment:
Q  272 ttacttttaactaaaatcaattc-tacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||||||||    
T  21455946 ttacttttaactaaaatcaattcttacaaactcaattatatcaaaatcaatt 21455997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 34910964 - 34911049
Alignment:
Q  166 tatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||| ||||||| |||| |||||||||| ||| | ||  ||||| || |||| |||||||||||||  |||||||||||||||    
T  34910964 tatgatttgtagcttttgattctagaattgattttgacacacaa--ttatagtttaactaacttttacatgaa--tatccaaacataaat 34911049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 2002625 - 2002580
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||||||||||  ||||||||||| ||| |||||||||||||    
T  2002625 aattgattttggaggcgtagaattgattttgacatgtttggttgtt 2002580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 2008498 - 2008453
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||    
T  2008498 aattgattttggaggtgtagaattgtttctgacatgtttgattgtt 2008453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 4907980 - 4908068
Alignment:
Q  166 tatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||||  |||||| ||||||||| |  || ||| | ||||||||||||| ||| |||||||||||| | |||||||||| ||||    
T  4907980 tatgatttgtagtttttgattctataatttaccttcacaaacaaatttataattc-acttacttttacatgattttatccaaacacaaat 4908068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 6653842 - 6653922
Alignment:
Q  177 acttttgaatctataattgattttaacatataaatttataattcaactcacttttac--atgaatgtatccaaacataaat 255  Q
    |||||||| |||| |||||| ||| ||||  ||||||||| || |||||||||||||  |||| |||||||||||| ||||    
T  6653842 acttttgattctagaattgagtttcacatgcaaatttatagtttaactcacttttacatatgattgtatccaaacacaaat 6653922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 31305903 - 31305826
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| |||| |||||||||  |||   ||||||||   ||||||||||||||||| ||| |||||||||||||||    
T  31305903 cttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaat 31305826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 32217399 - 32217448
Alignment:
Q  273 tacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||| |||||||||||||||| |||| ||| ||||||||| ||||    
T  32217399 tacttttaattaaaatcaattctacataattcattctatcaaaataaatt 32217448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 32889005 - 32888936
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||| ||||| | || |||||||||  |||||||||||||||||| ||| ||| |||||||||||    
T  32889005 tctacaatttattttcaaatttaaatttattgttcaactcacttttacataaatatattcaaacataaat 32888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 34026667 - 34026596
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaat--gtatccaaacataaat 255  Q
    |||| |||||||||| |||  |||||| || |||||||||| ||||||||||||  | ||||||||||||||    
T  34026667 tctacaattgatttttacacttaaattaattattcaactcatttttacatgaatacgcatccaaacataaat 34026596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 255
Target Start/End: Original strand, 37684335 - 37684511
Alignment:
Q  80 attttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaac 178  Q
    ||||||||||| || ||||||||| || ||||||||||||| | || |  |||||||| |||||| | |||||||| ||||||| | || |||||||  |    
T  37684335 attttggaggtgtaaaattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggc 37684434  T
Q  179 ttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| |||| ||||||||||||   | |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  37684435 ttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtatccaaacacaaat 37684511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 13384816 - 13384653
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgat 171  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||| | || |  ||||  || | |||| | |||||||| || ||| || ||  ||    
T  13384816 ataattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaat 13384717  T
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacat 235  Q
    ||||| ||||||| |||| |||||||||| ||| | ||||||||| ||||||||||||||||||    
T  13384716 ttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 32927834 - 32927998
Alignment:
Q  92 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 190  Q
    ||||||||| ||||| ||||||||||| | |  | |  |||||||| || ||| ||| |||||| ||||||| | || |||||||| ||||||| | ||     
T  32927834 tagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatag 32927933  T
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| ||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  32927934 aattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 244
Target Start/End: Original strand, 38868439 - 38868593
Alignment:
Q  92 tagaattgattctgatatgttt-ggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatcta 189  Q
    |||||||||||||||||| ||| ||||||| | || |  ||||||| ||| ||||| |||||||| ||||||| | || |||||||| ||||||  ||||    
T  38868439 tagaattgattctgatatattttggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttcta 38868538  T
Q  190 taattgattttaacatataaatttataattcaactcacttttacatgaatgtatc 244  Q
    ||||||||||| ||| | ||||||||| ||||||||| |||||||  ||||||||    
T  38868539 taattgattttcacacacaaatttatagttcaactcaattttacaataatgtatc 38868593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 26100211 - 26100125
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||| ||||||||||||||| ||| | ||||||||  |||||||||||||||||| |||| ||||||||| ||||    
T  26100211 gatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaat 26100125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 35495010 - 35495096
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||| |||| ||||| |||| ||| | |||| |||| ||||||| |||||||||||||| |||||||||| ||||    
T  35495010 gatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaacacaaat 35495096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 32994329 - 32994221
Alignment:
Q  148 aattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 246  Q
    |||||||| ||||||| | |||||||| || ||||||| |||| |||||||||| | | | ||||||||| | ||| | |||||||||||||||  ||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagtgcaaatgacttttacatgaatgagtcca 32994230  T
Q  247 aacataaat 255  Q
    |||||||||    
T  32994229 aacataaat 32994221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 9461560 - 9461517
Alignment:
Q  212 ttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacacaaat 9461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 27218872 - 27218821
Alignment:
Q  207 taaatttataattcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||||||||||||| |||||||| ||| |||| |||||||||||||    
T  27218872 taaatttataattcaactcatttttacataaatttatctaaacataaattac 27218821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 36200237 - 36200120
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatata---aatttataattcaactc 225  Q
    ||||| ||||||||| | ||||||||  |||||| | ||||||||||   |||||| |||| |||||||||| ||| ||    |||||||||||||| ||    
T  36200237 aattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattc 36200138  T
Q  226 acttttacatgaatgtat 243  Q
    ||||||||||||||||||    
T  36200137 acttttacatgaatgtat 36200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 4662968 - 4662882
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||  |||| |||||||||| ||| | |||| |||| |||||||| ||||| | |||||||||||||||| ||||    
T  4662968 gatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactcgcttttccgtgaatgtatccaaacacaaat 4662882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 41408266 - 41408316
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    |||| ||||||||||||||||||||||||| |||  |||||||||||||||    
T  41408266 acttctaactaaaatcaattctacaaaattaattcaatcaaaatcaatttt 41408316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 38868780 - 38868849
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||| ||  | ||||||||| ||| ||||||||||||||||| |||| |||| ||||||    
T  38868780 tctataattgattttcacgcacaaatttatagttctactcacttttacatgaacgtattcaaatataaat 38868849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 43492253 - 43492216
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaat 43492216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 7533827 - 7533898
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||| |||| |||||||||| |||||  || |||||||| |||||||||||| ||||||||| |||||||    
T  7533827 cttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaaca 7533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 32101115 - 32101179
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||||| |||||||||| ||| ||||    
T  32101115 aattaattttcatatacaaatttatagttcaactcacttttacataaatgtatccacacacaaat 32101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 36779467 - 36779515
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||||||    
T  36779467 acttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaatt 36779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 40769415 - 40769351
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||||||||||| ||| | ||||||||||||||| ||| |||||||  ||||||| ||||||    
T  40769415 tctataattgattttcacacacaaatttataattcaattcaattttacacaaatgtattcaaaca 40769351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 29970878 - 29970929
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttt 325  Q
    |||||||||||||||||||| |||||| |  ||| |||||||||||||||||    
T  29970878 acttttaactaaaatcaattatacaaattcaattctatcaaaatcaattttt 29970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 32767445 - 32767495
Alignment:
Q  207 taaatttataattcaactcacttttaca--tgaatgtatccaaacataaat 255  Q
    |||||||||  |||||||||||||||||  |||||||||||||||||||||    
T  32767445 taaatttattgttcaactcacttttacacatgaatgtatccaaacataaat 32767495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 2764494 - 2764448
Alignment:
Q  209 aatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||  |||||||||||||||| |||||||||||||| ||||||    
T  2764494 aatttatggttcaactcacttttacgtgaatgtatccaaatataaat 2764448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 18356115 - 18356069
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    |||||||||||||||||||| |||| || ||||||||| ||||||||    
T  18356115 aaatttataattcaactcacgtttagataaatgtatccgaacataaa 18356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 32736504 - 32736570
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||| ||||| ||| | ||||||||| ||||| |||||||||||||||||||| |||| | ||||||    
T  32736504 aattaatttttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 32736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 33184158 - 33184244
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcac-ttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||  |||||||||| ||||| ||| | ||| |||||||||||||||| |||| ||| |||||||| ||||| ||||    
T  33184158 atttgtaatttttttatctataatttatttttacagacaaacttataattcaactcacttttttcataaatgtatctaaacacaaat 33184244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 38335926 - 38335840
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||  ||||||| | || |||||||||| ||  | ||||||||| |  ||||||||||||||||||||||||| |||| ||||    
T  38335926 gatttgttgcttttgattttagaattgatttttacgcacaaatttatattctaactcacttttacatgaatgtatccgaacacaaat 38335840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 13929723 - 13929678
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataa 253  Q
    ||||||||  |||||| |||||||||||||||||||| ||||||||    
T  13929723 aaatttatttttcaacccacttttacatgaatgtatcaaaacataa 13929678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 32681348 - 32681303
Alignment:
Q  190 taattgattttaacatataaatttataattcaactcacttttacat 235  Q
    ||||||||||| | | | ||||||||||||||||||||||||||||    
T  32681348 taattgatttttaaacacaaatttataattcaactcacttttacat 32681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 32994390 - 32994341
Alignment:
Q  69 ggttataattgattttggaggtatagaattgattctgatatgtttggttg 118  Q
    |||| ||||||||| |||| || ||||||||||| |||||||||||||||    
T  32994390 ggttgtaattgattctggatgtgtagaattgattatgatatgtttggttg 32994341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 35495297 - 35495366
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||| | |   ||||||||  ||||| |||||||||  |||||||||||||||||||||    
T  35495297 tctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataaat 35495366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 3279039 - 3279079
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  3279039 ttcaactcacttttacatgaatatatccaaaaacaaattac 3279079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 8693839 - 8693875
Alignment:
Q  222 actcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  8693839 actcacttttgcatgaatttatccaaacataaattac 8693875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 13418875 - 13418815
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaa 238  Q
    ||||||| || |||||||||||||||||  ||||||||  ||||||||| ||| |||||||    
T  13418875 cttttgattccataattgattttaacattcaaatttatcgttcaactcaatttaacatgaa 13418815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 16972107 - 16972043
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| | | | ||||||||  ||||| |||||||||||||||||||| |||||| ||||    
T  16972107 aattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaat 16972043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 37451986 - 37451942
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacata 252  Q
    |||||||| |||| |||||||||||||||||||||  ||||||||    
T  37451986 aaatttattattcgactcacttttacatgaatgtactcaaacata 37451942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 42458347 - 42458311
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  42458347 ttcaactcatttttacatgaatgtatccgaacataaa 42458311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 6951400 - 6951291
Alignment:
Q  140 gtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaa 238  Q
    |||||||||||||||| ||||||| | || |||||||| ||||||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||||    
T  6951400 gtctctataattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacatgaa 6951301  T
Q  239 tgtatccaaa 248  Q
    | ||||||||    
T  6951300 tttatccaaa 6951291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 31906201 - 31906349
Alignment:
Q  92 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 190  Q
    ||||||||||| ||| ||||||| || || |||  | |||||| || |  |||||||||||||| ||||||| | ||||||||||||||||||| | |||    
T  31906201 tagaattgattatgacatgtttgattatttttgggtttaattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatat 31906300  T
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaat 239  Q
    ||||||| ||  |||||||||||||| ||||||||||||||||||||||    
T  31906301 aattgatattttcatataaatttatagttcaactcacttttacatgaat 31906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 18851242 - 18851066
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgattt 173  Q
    |||||||| ||||| | ||||||||| |||||  |||||||||| |||  |||  |||||||  | || |||||||||||| ||||||| | ||||||||    
T  18851242 aattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgattt 18851143  T
Q  174 gtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||| ||||||| | || |||||||||| ||| | | ||||||| || ||||||||||||||||||  ||||||||||    
T  18851142 gtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatgaagttatccaaaca 18851066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 42858052 - 42858209
Alignment:
Q  95 aattgattctgatatgtttggttgttattga-ttgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataa 192  Q
    ||||||||||   ||||||||||||| |||| ||  |||| ||| || ||||| |||||||| ||||||| | || |||||| | ||||| | |||||||    
T  42858052 aattgattctagcatgtttggttgttgttgacttagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataa 42858151  T
Q  193 ttgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    |||||||| ||| | ||||||||| |||||||||||||||||||||| ||| ||||||    
T  42858152 ttgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaaca 42858209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 22226399 - 22226227
Alignment:
Q  72 tataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatga 170  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||| | || |  |||||||| ||| |   | ||||||| |||||| |||||  |    
T  22226399 tataattgattttggacgtgtagaattgattctgacatgtttggttgttgtcgactaaaattgattttgttttgttgattgattctacttgaagatagta 22226300  T
Q  171 tttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    |||||| ||||||| | || |||| | ||| ||| | ||||||| | ||| ||| |||||||||| |||||||    
T  22226299 tttgtagcttttgattttagaattaacttttacacacaaatttagagttcgactaacttttacattaatgtat 22226227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 9185063 - 9184994
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| ||||||||||||||| |||||||||  |||||||||||| ||||| | ||||| |||||||||||    
T  9185063 tctagaattgattttaacatttaaatttatcgttcaactcacttctacataagtgtattcaaacataaat 9184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 9818717 - 9818826
Alignment:
Q  133 tgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgatttta-acatataaatttataattcaactcacttt 230  Q
    ||||| || ||| |||||||||| ||||||| | ||||||||||| ||||||| |||| ||||||||||  | | | ||||||||| |||||||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  231 tacatgaatg 240  Q
    || |||||||    
T  9818817 tatatgaatg 9818826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 255
Target Start/End: Complemental strand, 10860497 - 10860333
Alignment:
Q  93 agaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattat-acttga-gatatgatttgtaacttttgaatctat 190  Q
    |||||||||| ||| |||||||||| ||||||| | ||||||||| ||| |||| || ||||| | |||||| | ||  ||||||| ||||||  ||||     
T  10860497 agaattgattttgacatgtttggtttttattgaatataattgattttgtgtctagaagtgattctgacttgaagctagaatttgtagcttttgcctctag 10860398  T
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    | |||||||| |  | |  |||||| ||| |||||||||| |||||||||||||| |||||||||    
T  10860397 agttgatttttagctttggatttatcatttaactcactttcacatgaatgtatccgaacataaat 10860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 2868383 - 2868332
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttt 325  Q
    |||||||||||||||||||||||||||||| ||| ||  |||||||||||||    
T  2868383 acttttaactaaaatcaattctacaaaattaattctactaaaatcaattttt 2868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 14671085 - 14671131
Alignment:
Q  209 aatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||    
T  14671085 aatttatcatacaactcacttttacatgaatgcatccaaacataaat 14671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 34443017 - 34443083
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||||||||| | ||||||||  ||||| ||||||||| || ||||||| |||||||||||||    
T  34443017 aattgattttaacaaacaaatttatttttcaattcacttttatataaatgtattcaaacataaatta 34443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 246
Target Start/End: Original strand, 36289974 - 36290132
Alignment:
Q  89 gtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatc 187  Q
    ||||| ||||||||||||||| |||||||||| | || |  |||| ||  ||  |  |||||||||||||||||| | || ||||||| | |||||| ||    
T  36289974 gtataaaattgattctgatatatttggttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattc 36290073  T
Q  188 tataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 246  Q
     ||| |||||||| | | | | ||||||| ||||||||| ||||||| |||||||||||    
T  36290074 catatttgattttcagacacatatttatagttcaactcagttttacacgaatgtatcca 36290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 15368396 - 15368457
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttac 233  Q
    ||||||||||||| | || |||||||| ||||| | ||||||||||||||||||| ||||||    
T  15368396 ttgtaacttttgattatagaattgattctaacacacaaatttataattcaactcagttttac 15368457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 28110599 - 28110431
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgat 171  Q
    ||||||||||  |||||| ||||||||||||  |||||||| |||||| |  |||  |||||||| ||| | || |||||||| || || | | |  |||    
T  28110599 ataattgattccggaggt-tagaattgattcatatatgtttcgttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggat 28110501  T
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgt 241  Q
    ||||||||||||| | || |||||||||| ||| | ||||||||| || |||||||||||| || |||||    
T  28110500 ttgtaacttttgattttagaattgattttcacacacaaatttatagttgaactcacttttatataaatgt 28110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 38845441 - 38845550
Alignment:
Q  148 aattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcac-ttttacatgaatgtatcc 245  Q
    |||||||| ||||||| | || ||||||||  |||||| |||| |||||||||| ||| | |||| |||| || ||||||| |||||||||||| |||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttttacatgaatatatcc 38845540  T
Q  246 aaacataaat 255  Q
    ||||| ||||    
T  38845541 aaacacaaat 38845550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 10898762 - 10898825
Alignment:
Q  190 taattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||||||| ||| | ||||||||  |||||||||||||||||||||  ||||||||||||||    
T  10898762 taattgatttttacacacaaatttattgttcaactcacttttacatgaa-ctatccaaacataaa 10898825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 39097267 - 39097347
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||||||||| | | ||||||||||||| ||| ||||||||| | ||||||  |||||||||| |||| ||| |||||    
T  39097267 atttgtaacttttaattatataattgattttcacacataaatttaaagttcaacctacttttacataaatgaatcaaaaca 39097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 11577637 - 11577599
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaatt 256  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  11577637 ttcaactcacttttacatgaatgcatccaaacacaaatt 11577599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 6949673 - 6949726
Alignment:
Q  190 taattgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    ||||||||||| | | ||||||||||||| ||||||||||||| || |||||||    
T  6949673 taattgattttcatacataaatttataatccaactcacttttatataaatgtat 6949726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 11648005 - 11648171
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgat 171  Q
    |||||||||||||| ||| || |||||||| ||| ||||||| ||| | | || |  |||| ||||||  | || |||||||| |||||| || || |||    
T  11648005 ataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattctacttgaagctaagat 11648104  T
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatg 240  Q
    |||||  |||||| | || |||||||||| ||| |  ||  |||||||||||||| |||||||||||||    
T  11648105 ttgtacattttgattataaaattgattttcacacacgaa--tataattcaactcaattttacatgaatg 11648171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 12208859 - 12208814
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataa 253  Q
    ||||||||  |||||| |||||||||||||||||||| ||||||||    
T  12208859 aaatttatttttcaacccacttttacatgaatgtatcaaaacataa 12208814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 36927699 - 36927666
Alignment:
Q  222 actcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||| ||||||||||||||||||||    
T  36927699 actcacttttacaggaatgtatccaaacataaat 36927666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 38265061 - 38265106
Alignment:
Q  277 tttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    |||||| |||||||||||||||||||  ||| ||||||||||||||    
T  38265061 tttaaccaaaatcaattctacaaaatcaattttatcaaaatcaatt 38265106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 42529519 - 42529552
Alignment:
Q  186 tctataattgattttaacatataaatttataatt 219  Q
    ||||||||||||||||||||| ||||||||||||    
T  42529519 tctataattgattttaacataaaaatttataatt 42529552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 4306570 - 4306618
Alignment:
Q  207 taaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  4306570 taaatttattgttcaattcttttttacatgaatgtatccaaacataaat 4306618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 6806313 - 6806381
Alignment:
Q  93 agaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatactt 161  Q
    |||||||||||||| |||||||||| || |||| || |||||||| || || || |||||||| |||||    
T  6806313 agaattgattctgacatgtttggttattcttgagtgaaattgattctgcctttagaattgattctactt 6806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 35064988 - 35065169
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgattt 173  Q
    |||||||| ||||||| ||||||||||| ||| || |||||||| | | || |  |||||||| || ||| |||||||||| ||||||| | ||  ||||    
T  35064988 aattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagctagtattt 35065087  T
Q  174 gtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    || |||||||| |||| |||||||||| ||| | |||||||||  || ||||||||||||||||||||||||||||| ||||    
T  35065088 gtgacttttgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtatccaaacacaaat 35065169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 8604710 - 8604601
Alignment:
Q  147 taattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcc 245  Q
    ||||||||| ||||||| | || |||||||| |||| || |||| |||||||||| ||| | ||||||||| || ||  |||||||||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatcc 8604611  T
Q  246 aaacataaat 255  Q
    ||||||||||    
T  8604610 aaacataaat 8604601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 32818434 - 32818354
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||| ||||||| |||| ||||||||||  || | ||||||||| ||||||| |||||||||||||||||||||||||    
T  32818434 atttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 53713626 - 53713538
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||| ||||||| ||||||||||| ||  ||||| | || |||| |||||||||||||||||||||||| |||||||| ||||||    
T  53713626 gatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcacttttacatgaatgtgtccaaacacaaatta 53713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 53913718 - 53913563
Alignment:
Q  94 gaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataa 192  Q
    |||||||||| || ||||||| ||||| | || |  |||||||| || || ||||||||||| ||||| | |||||||||| | | || ||| |||||||    
T  53913718 gaattgattccgacatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataa 53913619  T
Q  193 ttgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    |||||||| ||| ||||||||||| || |||||||| | |||| ||||||| ||||    
T  53913618 ttgattttcacacataaatttatagttaaactcactataacataaatgtatgcaaa 53913563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 72 - 255
Target Start/End: Original strand, 33456296 - 33456478
Alignment:
Q  72 tataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgaga-tatga 170  Q
    |||||||||||||| | || ||||||||||| ||| || ||| |||| | | || |  ||||||||  ||||||| |||| ||| || || | | |||||    
T  33456296 tataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgattccgtctctagaatttattctatttaaaactatga 33456395  T
Q  171 tttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| ||||||| |||||||||||||||  || |||||| |||| ||||| |||||||||||  || |||| |||||||||||    
T  33456396 tttgtagcttttgattctataattgatttt--cacataaatctatagttcaattcacttttacacaaaagtattcaaacataaat 33456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 45011894 - 45011974
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaac 249  Q
    |||||||| ||||||| |||| |||||||||| ||| | ||||||||||||  ||||||||||| |||||||||| |||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttatatgaatgtattcaaac 45011974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 52965910 - 52965854
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttaca 234  Q
    ||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  52965910 cttttgattctaaaattgattctaacacataaatttataattcaactcacttttaca 52965854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 21691277 - 21691191
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||  | || |||||||||| ||| | ||||||||| |||||| ||||||||||||||| |||||||||| ||||    
T  21691277 gatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatccaaacacaaat 21691191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 39386578 - 39386723
Alignment:
Q  95 aattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataat 193  Q
    |||||||| |||||||||||||||||    | |  |||||||| |||||||| |||||||| ||||| | | ||  |||| |||| ||| | ||||||||    
T  39386578 aattgattatgatatgtttggttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataat 39386677  T
Q  194 tgattttaacatataaatttataattcaactcacttttacatgaat 239  Q
    ||||||| ||| | | ||||| | ||||||||||||||||||||||    
T  39386678 tgattttcacacacatatttaaagttcaactcacttttacatgaat 39386723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 55927796 - 55927743
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaattacatt 261  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||| |||||    
T  55927796 aaatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacatt 55927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 43868183 - 43868235
Alignment:
Q  196 attttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    ||||| |||||||||||||||||| || |||||||||||| ||||||||||||    
T  43868183 atttttacatataaatttataatttaagtcacttttacataaatgtatccaaa 43868235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 44279010 - 44278954
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 247  Q
    |||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||||    
T  44279010 aattgattctaacacataaatttttaattcaaatcatttttacatgaatgtatccaa 44278954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 16552014 - 16552053
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaa 247  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16552014 aaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 254
Target Start/End: Original strand, 22683806 - 22683969
Alignment:
Q  93 agaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattata-cttga-gatatgatttgtaacttttgaatctat 190  Q
    |||||||||| ||| ||||| | ||||| |||| |  |||||||| || ||| | |||| |||||| ||||| | |||||| |||| ||||||| ||||     
T  22683806 agaattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaa 22683905  T
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    |  ||||||| ||||  ||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  22683906 acgtgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaa 22683969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 16644008 - 16644083
Alignment:
Q  179 ttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| |||| |||||||||| |||||||||| ||| || ||| ||||| ||| |||||||||| |||||||||||    
T  16644008 ttttgattctagaattgatttttacatataaatatatcat-caattcactattatatgaatgtattcaaacataaat 16644083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 42694557 - 42694502
Alignment:
Q  191 aattgattttaacata--taaatttataattcaactcacttttacatgaatgtatc 244  Q
    |||||||| |||||||  || |||||||||||||||||||||||||||||| ||||    
T  42694557 aattgattctaacatacatacatttataattcaactcacttttacatgaatatatc 42694502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 45694651 - 45694715
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    |||| |||||||| ||||| | | ||||||| || |||||| |||||||||||||||||||||||    
T  45694651 tctagaattgattctaacacacacatttatagttgaactcatttttacatgaatgtatccaaaca 45694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 1616515 - 1616561
Alignment:
Q  276 ttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||| |||||||||||||||||||  ||| ||||||||||||||    
T  1616515 ttttaaccaaaatcaattctacaaaatcaattctatcaaaatcaatt 1616561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 5025582 - 5025632
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    |||| ||||||||||||||||||||||||  |||  |||||||||||||||    
T  5025582 acttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaatttt 5025632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 33843771 - 33843817
Alignment:
Q  209 aatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||  ||||||||||| |||||||||| |||||||||||||||    
T  33843771 aatttattgttcaactcactattacatgaatatatccaaacataaat 33843817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 39000580 - 39000530
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    ||||||||||||| |||||||||||||||  |||  |||||||||||||||    
T  39000580 acttttaactaaactcaattctacaaaatcaattcaatcaaaatcaatttt 39000530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 2326973 - 2326928
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttg 118  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||||    
T  2326973 ataattaattatggaggtatagaattgattatgacatgtttggttg 2326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 21691380 - 21691335
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||| ||||||| ||||||||||||||| || ||||||||||    
T  21691380 aattgattctggaggtgtagaattgattctgacatatttggttgtt 21691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 26911855 - 26911798
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    |||| |||||||||  ||||| ||||||||| || || ||||||||||||||||||||    
T  26911855 tctagaattgatttccacatacaaatttatagtttaattcacttttacatgaatgtat 26911798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 39733777 - 39733619
Alignment:
Q  95 aattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttgtaacttttgaatctataatt 194  Q
    |||||||||||| || ||| ||||||||  | | ||||| ||| || ||| |||||||||| |||||||| ||  ||||||| ||||||| | || ||||    
T  39733777 aattgattctgacatattttgttgttatcaagtataatttattctgcctccataattgattctacttgagttacaatttgtagcttttgattgtagaatt 39733678  T
Q  195 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| | ||| | |  |||| | ||||||||  |||| ||| |||||||||||||| ||||    
T  39733677 gattatcacacaca--tttaaagttcaactccttttttcataaatgtatccaaacacaaat 39733619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 47144251 - 47144320
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||| ||    ||||||||  | ||||| ||||||| ||||||||||||||||||||||    
T  47144251 tctataattgatttttacgctaaaatttattgtccaactaacttttagatgaatgtatccaaacataaat 47144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 49138995 - 49138950
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||| | ||||| ||||||||||||||| |||||||||||||    
T  49138995 aattgattctagaggtgtagaattgattctgacatgtttggttgtt 49138950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 30357491 - 30357579
Alignment:
Q  129 taattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttata 216  Q
    ||||||||| | ||| || |||||||| ||||||| | | ||||||||| ||||||| | ||||||||||||| ||| | |||||||||    
T  30357491 taattgattttatctttagaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttata 30357579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 33347235 - 33347147
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    ||||||||| |||| | || |||||| |||||  || | |||| |||| ||||| |||||||||||||| ||||| |||||| ||||||    
T  33347235 gatttgtaattttttattcgataattaatttttgcacacaaatatatagttcaattcacttttacatgattgtattcaaacaaaaatta 33347147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 47298025 - 47297985
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactca 226  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  47298025 tctataattgatttttacatataaatgtatagttcaactca 47297985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 52342025 - 52342065
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  52342025 ttcaactcatttttacatgaatgtattcaaacacaaattac 52342065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 31751 - 31930
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgattt 173  Q
    |||||||| | ||||| ||||||||||||||| ||||||||||||| | || |  |||||||| || ||| | ||||||||||||||| || || |||||    
T  31751 aattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagctaggattt 31850  T
Q  174 gtaacttttgaatctataattgattttaacatataaatttataatt---caactcacttttacatgaatgtatccaaaca 250  Q
    ||| ||||||| | |  |||||||||| ||||| | ||||||| ||   |||||||||||||||| ||||||||||||||    
T  31851 gtagcttttgattattgaattgattttcacatacatatttatagttaaacaactcacttttacataaatgtatccaaaca 31930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 31708303 - 31708223
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||| ||||||| |||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 31013039 - 31013124
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| | |||||||||| |||||||| ||||| | ||||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  31013039 atttgtagcctttgaatctagaattgattctaacacacaaatttagaattcaactcacttgtacatgaatgcatccaaacacaaat 31013124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 40147906 - 40147832
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacata 252  Q
    ||||||| |||| ||||||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||||||||    
T  40147906 cttttgattctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtatccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 35264467 - 35264392
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataa 253  Q
    ||||||| |||| ||||||||||||||  |||||||||  ||||| ||| ||||||||||||||| ||||||||||    
T  35264467 cttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataa 35264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 52364068 - 52364137
Alignment:
Q  166 tatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacat 235  Q
    |||||||| || ||||||| ||||||||||||||| | | ||||||||| | ||||||||||||||||||    
T  52364068 tatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttacat 52364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 43661883 - 43661947
Alignment:
Q  193 ttgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||| ||| |||||| |||  ||||||||||||||||||||||||||  ||||||||||||    
T  43661883 ttgattttcacacataaatgtattgttcaactcacttttacatgaatgtataaaaacataaatta 43661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 44225633 - 44225689
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||| |||||||||||||||||||  ||||||| |||||||||||| |||||    
T  44225633 acttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattttctccac 44225689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 4526153 - 4526224
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgt 241  Q
    ||||||||||||||| | || |||||||||| ||| | ||||||||| |||||| ||||||||||| |||||    
T  4526153 atttgtaacttttgattttaaaattgatttttacacacaaatttatagttcaacacacttttacataaatgt 4526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 39054159 - 39054105
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaact 224  Q
    |||| |||||||| | |||| ||||||||||||||||||||||||||||| ||||    
T  39054159 atttataacttttaattctagaattgattttaacatataaatttataatttaact 39054105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 46853603 - 46853513
Alignment:
Q  165 atatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| | | ||||||| |||| ||||||||||||||   ||||||||  |||||||||||||||||| ||| |||||  ||||||||    
T  46853603 atatgattcggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaat 46853513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 33792061 - 33791984
Alignment:
Q  179 ttttgaatctataattgattttaacatataaatttataattcaa-ctcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| | ||||||||||||| ||| ||||||||||  || || ||||||||||||||||| |||||||||| ||||    
T  33792061 ttttgattttataattgatttttacacataaatttattgtttaaactcacttttacatgaatctatccaaacacaaat 33791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 35253515 - 35253446
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||||||||| |||   |||||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  35253515 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 35253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 53078431 - 53078476
Alignment:
Q  279 taactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||    
T  53078431 taactaaaatcaattctacaaaattaattcaatcaaaatcaatttt 53078476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 54173363 - 54173314
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacat 235  Q
    ||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  54173363 tctataattaatttttacaaataaatttatagttcaactcacttttacat 54173314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 36302225 - 36302285
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacat 251  Q
    ||||||||||| ||  |||||||||  ||||||||||||||||||||||| ||||| ||||    
T  36302225 aattgattttagcacttaaatttattgttcaactcacttttacatgaatgaatccacacat 36302285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 4401397 - 4401350
Alignment:
Q  211 tttataattcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||||||| | ||||||||||||||||| | |||||||||||    
T  4401397 tttataattcaacttatttttacatgaatgtatctatacataaattac 4401350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 5406973 - 5407008
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5406973 ttcaaatcacttttacatgaatgtatccaaacataa 5407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 49356457 - 49356370
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||||||| || ||||||||||||||| ||| ||||||||||  || |||  ||| |||||| ||| |||  ||||||||||||    
T  49356457 atttgtaactttagattctataattgatttttacaaataaatttatggtttaacctactcttacataaatatatttaaacataaatta 49356370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 7262885 - 7262919
Alignment:
Q  220 caactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||||||||||||||||||||| |||||||||    
T  7262885 caactcacttttacatgaatgtatcaaaacataaa 7262919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 21261273 - 21261223
Alignment:
Q  272 ttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||||| ||||||||||||||| |||  ||| ||||||||||||||    
T  21261273 ttacttttaaccaaaatcaattctacataatcaattttatcaaaatcaatt 21261223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 46551294 - 46551244
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||  |||||||||||||| |||||||||| |||||| |||||||    
T  46551294 aaatttatagctcaactcacttttatatgaatgtattcaaacaaaaattac 46551244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 52141407 - 52141361
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgt 119  Q
    |||||||||||| ||||| |||||| ||||||||||||||| |||||    
T  52141407 ataattgatttttgaggtgtagaatagattctgatatgtttagttgt 52141361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 30958105 - 30958142
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaat 30958142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 30973917 - 30973954
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaat 30973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 41591361 - 41591332
Alignment:
Q  226 acttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||||||||||||||||||    
T  41591361 acttttacatgaatgtatccaaacataaat 41591332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 31130070 - 31130038
Alignment:
Q  221 aactcacttttacatgaatgtatccaaacataa 253  Q
    ||||||||||||||||||||||| |||||||||    
T  31130070 aactcacttttacatgaatgtattcaaacataa 31130038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 31492788 - 31492870
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||| ||||||| |||| ||||||||| |||| | ||||||||||||||| ||  ||||| || |||||||||||| |||||    
T  31492788 atttgtagcttttgattctagaattgattt-aacacacaaatttataattcaa-tctattttatattaatgtatccaaatataaa 31492870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 41596192 - 41596128
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| ||| | || |||||| ||  |||||||||| |||||||||||||||||| ||||    
T  41596192 aattgatttttacacacaagtttatagtttgactcacttttccatgaatgtatccaaacagaaat 41596128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 38797734 - 38797609
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcact 228  Q
    ||||| ||||| |||  ||||||||||||||||| | ||||||||||||||| | |||| | |||||||||| ||| | ||||||||| |||||||||||    
T  38797734 aattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaactcact 38797635  T
Q  229 tttacatgaatgtatccaaacataaat 255  Q
    |||| || ||||||| |||||||||||    
T  38797634 tttaaat-aatgtatgcaaacataaat 38797609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 28084031 - 28083867
Alignment:
Q  92 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 190  Q
    ||||||||||||||| || |||||||||| | || |  |||||||| |||||   ||||||||| ||||||| | ||  ||||||| ||||||| |||||    
T  28084031 tagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctat 28083932  T
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| ||||| ||| | ||||||  | |||| ||||||||||||||||| |||||||||| ||||    
T  28083931 aattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatccaaacacaaat 28083867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 34915088 - 34915172
Alignment:
Q  171 tttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| ||||||| |||| |||||||| ||||| |  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaat 34915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 3016183 - 3016265
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacata 252  Q
    ||||||| ||||||| |||| ||||||| || ||| |||||||||   |||||||||||||||||||||||||||||||||||    
T  3016183 atttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 1514326 - 1514450
Alignment:
Q  133 tgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcactttt 231  Q
    ||||| |||||| | |||| ||| ||||||| | || |||||||| ||||| | | ||||||||||||| ||| | ||||||||  ||||||||| ||||    
T  1514326 tgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcattttt 1514425  T
Q  232 acatgaatgtatccaaacataaatt 256  Q
    ||||||||||||||||||| |||||    
T  1514426 acatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 7524133 - 7524219
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| ||||||| | || |||||||||| ||| | ||||||||| |||||||||||||||||| ||||| |||||||| ||||    
T  7524133 gatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaat 7524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 2555943 - 2556000
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  2555943 aattgattctaacatacaaatttataattcaactcacttttacatgaatacatccaaa 2556000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 11049270 - 11049347
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 246  Q
    |||||||| ||||||| |||| |||||||||| ||| | ||||||||| ||||| |||||||||| ||||||||||||    
T  11049270 gatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 30850442 - 30850393
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatg 240  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  30850442 aattgattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 47322070 - 47321902
Alignment:
Q  71 ttataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatg 169  Q
    |||||||| ||| ||||||| ||||||||||| ||| |||||| |||||| | || |  |||||||| ||  |||||||||||||||||||| || ||      
T  47322070 ttataatttattgtggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctaga 47321971  T
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaat 239  Q
    |||||  | |||| | |||| |||||||||| | | | ||||||||| ||||| ||||||||||||||||    
T  47321970 atttg-cagttttaattctagaattgattttcatacacaaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 322
Target Start/End: Original strand, 30557524 - 30557674
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnn 268  Q
    ||||||||  |||||| |||| |||||||||| ||| |  |||||||| ||||||||||||||| ||||||||||||||||| |||| || ||           
T  30557524 gatttgtagtttttgattctagaattgattttcacaca--aatttatagttcaactcacttttatatgaatgtatccaaacacaaatcac-ttctagtca 30557620  T
Q  269 nnnttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
       | ||||||||| ||||||||||||||| |||  ||| ||||||||||||||    
T  30557621 gagtcacttttaaccaaaatcaattctacagaatcaattctatcaaaatcaatt 30557674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 4347066 - 4347122
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||| |||||||||||||||||||  ||| || |||||||||||||||||||    
T  4347066 acttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaattttttccac 4347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 7790748 - 7790644
Alignment:
Q  129 taattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcac 227  Q
    ||||||||  ||||| || |||||||| ||||||| | |||||||||||  ||| || ||||||||||||||| ||| | ||||||||  ||||||||||    
T  7790748 taattgatattgtctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcac 7790649  T
Q  228 tttta 232  Q
    |||||    
T  7790648 tttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 24587949 - 24588001
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaa 238  Q
    |||||||||||||||||||   |||||||| ||||||||||||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttttacatgaa 24588001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 35961427 - 35961474
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  35961427 aaatttaaaattcaactcacttttacatgaatgtatagaaacataaat 35961474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 36780279 - 36780232
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgtt 120  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  36780279 ataattgattatggaggtgtagaattgattttgatatgtttggttgtt 36780232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 37733678 - 37733611
Alignment:
Q  190 taattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    |||||||||||| ||| ||||||||| |||||||||| || ||||| ||||||| ||||||| |||||    
T  37733678 taattgattttaccatttaaatttattattcaactcatttatacataaatgtattcaaacatgaatta 37733611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 3416017 - 3416179
Alignment:
Q  87 aggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaa 185  Q
    |||| |||| |||||||||| ||||||| ||||  |||| |  ||||||||| |  |||| |||||||||||||| | | || ||||||||  |||| |     
T  3416017 aggtgtagagttgattctgagatgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttat 3416116  T
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    | || |||||||||| ||| | ||||||||| || |||||| ||||| ||| |||||||||||    
T  3416117 tttagaattgatttttacacacaaatttatagtttaactcaattttatatggatgtatccaaa 3416179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 213297 - 213260
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaat 213260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 18325132 - 18325087
Alignment:
Q  210 atttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||    
T  18325132 atttattattcaacccacttttacatgaatgtatccatacataaat 18325087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 28267957 - 28267900
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    |||| |||| ||||||||  ||||||||||||||||| | ||||||||||||||||||    
T  28267957 tctagaattaattttaacgcataaatttataattcaagttacttttacatgaatgtat 28267900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 32370095 - 32370010
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||| |||| | |||| ||||  |||| ||| | |||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  32370095 atttgtaattttttattctagaattattttttacacacaaatttataattgaacttgcttttacatgaatgtatccaaacacaaat 32370010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 45660648 - 45660584
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| ||| | |||| || ||||||||| |||||||||||| | |||||||||||||||    
T  45660648 aattgatttttacacacaaatctacaattcaacttacttttacatgagtttatccaaacataaat 45660584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 1416238 - 1416203
Alignment:
Q  217 attcaactcacttttacatgaatgtatccaaacata 252  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1416238 attcaactcacttttacatgaatgtattcaaacata 1416203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 35548832 - 35548875
Alignment:
Q  192 attgattttaacatataaatttataattcaactcacttttacat 235  Q
    |||||||||||||  ||||||||| |||||||||||||||||||    
T  35548832 attgattttaacacttaaatttatcattcaactcacttttacat 35548875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 50569704 - 50569633
Alignment:
Q  173 tgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatc 244  Q
    |||||||||||||||||||||||| ||| ||| | ||||||||| |||||  || |||||  ||||||||||    
T  50569704 tgtaacttttgaatctataattgaatttcacaaacaaatttatagttcaatccagttttatttgaatgtatc 50569633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10325000 - 10324926
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 246  Q
    ||||| ||||||| ||||||||||||||| |||   ||||||||  ||  |||||||||||||| ||||||||||    
T  10325000 ttgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatcca 10324926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 14644718 - 14644792
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatc 244  Q
    |||||||  ||||||  ||||||| |||||| |||  ||| |||| |||||||||||||||||||| ||||||||    
T  14644718 atttgtagtttttgatcctataatcgatttttacaagtaattttaaaattcaactcacttttacatcaatgtatc 14644792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 30557441 - 30557483
Alignment:
Q  75 aattgattttggaggtatagaattgattctgatatgtttggtt 117  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||    
T  30557441 aattgattctggaggtgtagaattgattctgacatgtttggtt 30557483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 34721888 - 34721826
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 248  Q
    ||||||||||||||| ||| | ||||||||| ||| ||| |||||||||| ||||||| ||||    
T  34721888 tctataattgattttcacacacaaatttatagttcgacttacttttacatcaatgtattcaaa 34721826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 47053465 - 47053503
Alignment:
Q  210 atttataattcaactcacttttacatgaatgtatccaaa 248  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  47053465 atttatagtttaactcacttttacatgaatgtatccaaa 47053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 1233364 - 1233413
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaatta 257  Q
    ||||||||  || |||||||||| ||||||||||||| ||||||||||||    
T  1233364 aaatttattgttgaactcactttcacatgaatgtatctaaacataaatta 1233413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 2099731 - 2099666
Alignment:
Q  191 aattgattttaacatataaatttataattcaactca-cttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| ||| |||||||||||  ||||||||  ||||| ||||||||||||||||| ||||    
T  2099731 aattgattttcacacataaatttatagctcaactcattttttatatgaatgtatccaaacacaaat 2099666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 20720839 - 20720919
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||| ||| |||| |||||||||| |||   ||||||||  ||||||||||||||||   ||||| |||||||||||||    
T  20720839 ttgtaacttatgattctagaattgatttttacaatcaaatttatccttcaactcacttttac---aatgtgtccaaacataaat 20720919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 24697614 - 24697577
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||||||||||| || ||||||||||||||||    
T  24697614 ttcaactcacttttacataaacgtatccaaacataaat 24697577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 26373603 - 26373535
Alignment:
Q  172 ttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    ||||| ||||||| |||| |||||||||||    | ||||||| |||||| |||||||||||||||||||||    
T  26373603 ttgtagcttttgattctagaattgattttac---acaaatttaaaattcatctcacttttacatgaatgtat 26373535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 48549030 - 48548993
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  48549030 ttcaactcacttttacataaatgtatcaaaacataaat 48548993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 13344865 - 13344913
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||| |||||||||||||||||||  |||  |||||||||||||    
T  13344865 acttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 27962143 - 27962095
Alignment:
Q  207 taaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||||||| ||||||| | ||||| | ||||||||||||||||||||    
T  27962143 taaatttatagttcaactaatttttatacgaatgtatccaaacataaat 27962095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 36447700 - 36447660
Alignment:
Q  284 aaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    |||||||||||||||||||| |||  |||||||||||||||    
T  36447700 aaaatcaattctacaaaattaattcaatcaaaatcaatttt 36447660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 40352483 - 40352531
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 322  Q
    ||||||||| ||||||||||| |||||||  ||| ||||||||||||||    
T  40352483 acttttaaccaaaatcaattccacaaaatcaattctatcaaaatcaatt 40352531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 52263673 - 52263625
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaatt 256  Q
    ||||||||  || |||||| |||||||| ||||||||||||||||||||    
T  52263673 aaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 324
Target Start/End: Complemental strand, 28725209 - 28724963
Alignment:
Q  78 tgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgta 176  Q
    ||||||| ||| | |||||||||||  || ||||||||||||| | | ||  ||||||||  | ||| |  ||||||||||||||| | ||  |||||||    
T  28725209 tgatttttgagatgtagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaatattgattatacttgaagctagaatttgta 28725110  T
Q  177 acttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnnnttact 276  Q
     ||||||| ||||||||||||| | |||  || ||||| | |||| || ||||||||||  ||||||| ||||| ||||||  |||         |||||    
T  28725109 gcttttgattctataattgattctcacacgtatatttaaagttcagcttacttttacatagatgtatctaaacacaaattat-ttttagttagaattact 28725011  T
Q  277 tttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 324  Q
    ||||||||||||||| |||||| ||| |||||||||||||| ||||||    
T  28725010 tttaactaaaatcaactctacataatcgattatatcaaaataaatttt 28724963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 22195844 - 22195970
Alignment:
Q  130 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcact 228  Q
    |||||||||||||   | |||||||| ||||| | | ||||||||||||||||||| |||| |||||||||| ||||  | ||||||| || || |||||    
T  22195844 aattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcacatgcatatttatagtttaattcact 22195943  T
Q  229 tttacatgaatgtatccaaacataaat 255  Q
    |||||||  ||||||||||||| ||||    
T  22195944 tttacattcatgtatccaaacacaaat 22195970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 42816533 - 42816452
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||| |||||||| | |||| |||||||||| ||| | ||||||||||||||| |||||| ||||||||||||| ||||||    
T  42816533 gatttataacttttaattctagaattgattttcacacacaaatttataattcaattcacttctacatgaatgtatgcaaaca 42816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 40491600 - 40491684
Alignment:
Q  171 tttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||||| ||||||| |||| |||||| ||| ||| | ||||||| | || |||||||||||||||||||||||||||| ||||||    
T  40491600 tttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaat 40491684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 39956266 - 39956325
Alignment:
Q  188 tataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 247  Q
    |||||||||| || ||| |||||||||||||||||||||||||||  |||||||||||||    
T  39956266 tataattgatcttcacacataaatttataattcaactcacttttatgtgaatgtatccaa 39956325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 25156237 - 25156306
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||||||||| ||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||||    
T  25156237 tctagaattgatttttacacataaattaataaatcaactcacttttatatgaatgtattcaaacacaaat 25156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 27571891 - 27571968
Alignment:
Q  178 cttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||| |||| ||||||||||||||   || ||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  27571891 cttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtatccaaccataaat 27571968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 40561774 - 40561737
Alignment:
Q  218 ttcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaat 40561737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 40796032 - 40795969
Alignment:
Q  191 aattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    ||||||||||||||   |||||||  |||||| |||||||||||||||||||||||| ||||||    
T  40796032 aattgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaa 40795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 41386902 - 41386811
Alignment:
Q  148 aattgattatacttga-gatatgatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaa 238  Q
    |||||||| ||||||| | || |||||||| ||||| | |||| ||||||| || ||| | |||||||||||||||||||||||| ||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcacttttgcatgaa 41386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 41788343 - 41788422
Alignment:
Q  176 aacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||| |||||||||||||||||||   ||||||    ||||||||||||||| || ||||||| |||||||||||    
T  41788343 aacttttgagtctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaat 41788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 45557408 - 45557471
Alignment:
Q  192 attgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||| ||| | |||||| ||  |||||||||||||||||||||||||||||||| ||||    
T  45557408 attgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaat 45557471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 32295228 - 32295278
Alignment:
Q  193 ttgattttaacatataaatttataattcaactcacttttacatgaatgtat 243  Q
    |||||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  32295228 ttgattctaacacacaaatttataattcaactcacttttacataaatgtat 32295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 35772278 - 35772356
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 247  Q
    ||||||||  |||||| | || |||||||||| ||| ||||||||||||||||| | ||||||| || |||||||||||    
T  35772278 gatttgtagtttttgattttagaattgattttcacaaataaatttataattcaatttacttttatataaatgtatccaa 35772356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 31625560 - 31625616
Alignment:
Q  274 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||| ||| |||||||    
T  31625560 acttttaaccaaaatcaattctacagaattaattctatcaaaatcgattatttccac 31625616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 32683582 - 32683662
Alignment:
Q  170 atttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 250  Q
    ||||||| |||||||   || ||||||||||  || |||||||||||||| |||||||||||||| | ||||||| |||||    
T  32683582 atttgtagcttttgatattagaattgattttcccacataaatttataatttaactcacttttacacggatgtatctaaaca 32683662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 17111904 - 17111951
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| ||||    
T  17111904 aaatttataattctactcatttttacatgaatgcatccaaacacaaat 17111951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 9480635 - 9480585
Alignment:
Q  208 aaatttataattcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||||| |||||||||||| |||||||||| ||| || |||||||    
T  9480635 aaatttataatttaactcacttttaaatgaatgtattcaatcacaaattac 9480585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 12306791 - 12306829
Alignment:
Q  217 attcaactcacttttacatgaatgtatccaaacataaat 255  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  12306791 attcaactcacttttacatgaatctagccaaacataaat 12306829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 29163417 - 29163487
Alignment:
Q  73 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtct 143  Q
    |||||||||||||||||| |||||||||| |||| ||||||  ||||| |||| | | ||||||| |||||    
T  29163417 ataattgattttggaggtgtagaattgatcctgacatgtttaattgttgttgagtatgattgattctgtct 29163487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 32683694 - 32683748
Alignment:
Q  276 ttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 330  Q
    ||||||||||||||||||||||| |||  |||  |||||||||||||||| ||||    
T  32683694 ttttaactaaaatcaattctacataatcaattcaatcaaaatcaatttttcccac 32683748  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 41010035 - 41010065
Alignment:
Q  228 ttttacatgaatgtatccaaacataaattac 258  Q
    |||||||||||||||||||||||||||||||    
T  41010035 ttttacatgaatgtatccaaacataaattac 41010065  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 22310507 - 22310438
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||| ||||| |||  |||||||||  ||||| ||||||||||  ||||||||||||||||||||    
T  22310507 tctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaat 22310438  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 526032 - 525980
Alignment:
Q  197 ttttaacatataaatttataattcaactcacttttacatgaatgtatccaaac 249  Q
    |||| |||| ||||||||| ||||||||||||||||| ||||| ||| |||||    
T  526032 tttttacatttaaatttattattcaactcacttttacctgaatatattcaaac 525980  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 33853491 - 33853463
Alignment:
Q  227 cttttacatgaatgtatccaaacataaat 255  Q
    |||||||||||||||||||||||||||||    
T  33853491 cttttacatgaatgtatccaaacataaat 33853463  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 38123714 - 38123642
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattac 258  Q
    |||| |||||||||| |||   ||||||||   ||||||||||||||||||||||| ||| |||| |||||||    
T  38123714 tctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgtccgaacacaaattac 38123642  T

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Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 14162 - 14093
Alignment:
Q  186 tctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 255  Q
    |||| |||||||||| |||   ||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  14162 tctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaat 14093  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 23658 - 23573
Alignment:
Q  169 gatttgtaacttttgaatctataattgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 254  Q
    |||||||| |||||||||||| |  ||||||| | |   |||||||| ||||||||||||||||| | |||| |||| ||||||||    
T  23658 gatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactcacttttacttaaatgcatcctaacataaa 23573  T

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