View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_56 (Length: 391)

Name: NF0743_low_56
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_56
NF0743_low_56
[»] chr3 (23 HSPs)
chr3 (121-307)||(45350057-45350260)
chr3 (327-391)||(29530576-29530640)
chr3 (327-391)||(35855212-35855276)
chr3 (327-391)||(26102165-26102229)
chr3 (327-390)||(8528119-8528182)
chr3 (335-391)||(19368956-19369012)
chr3 (327-391)||(28981832-28981896)
chr3 (349-389)||(8393593-8393633)
chr3 (335-391)||(11955540-11955596)
chr3 (349-389)||(18682519-18682559)
chr3 (341-389)||(22519211-22519259)
chr3 (353-391)||(22473678-22473716)
chr3 (340-389)||(19895662-19895711)
chr3 (73-121)||(48767473-48767521)
chr3 (325-391)||(40831941-40832007)
chr3 (348-389)||(26777867-26777908)
chr3 (341-389)||(4139364-4139412)
chr3 (335-389)||(9563242-9563296)
chr3 (349-383)||(11602187-11602221)
chr3 (352-390)||(15321259-15321297)
chr3 (335-389)||(55297360-55297414)
chr3 (350-390)||(2847350-2847390)
chr3 (341-389)||(53800521-53800569)
[»] chr8 (21 HSPs)
chr8 (327-391)||(36776412-36776476)
chr8 (328-391)||(40587707-40587770)
chr8 (327-391)||(24053922-24053986)
chr8 (335-391)||(25346050-25346106)
chr8 (340-391)||(41972977-41973028)
chr8 (350-391)||(8760732-8760773)
chr8 (350-391)||(25836280-25836321)
chr8 (327-391)||(9472160-9472223)
chr8 (327-391)||(45434998-45435062)
chr8 (350-391)||(1942820-1942861)
chr8 (350-391)||(8162790-8162831)
chr8 (327-391)||(40616109-40616173)
chr8 (335-391)||(42245747-42245803)
chr8 (352-391)||(32844182-32844221)
chr8 (335-389)||(18378819-18378873)
chr8 (342-389)||(25620731-25620778)
chr8 (349-391)||(44389020-44389062)
chr8 (341-389)||(7389220-7389268)
chr8 (342-390)||(19243258-19243306)
chr8 (342-390)||(19316442-19316490)
chr8 (341-389)||(25616515-25616563)
[»] chr5 (16 HSPs)
chr5 (327-391)||(36886983-36887047)
chr5 (333-391)||(30754423-30754481)
chr5 (327-391)||(17643400-17643464)
chr5 (335-389)||(3088048-3088102)
chr5 (335-389)||(25698734-25698788)
chr5 (350-391)||(6305464-6305505)
chr5 (350-391)||(43138561-43138602)
chr5 (349-391)||(12422359-12422401)
chr5 (335-389)||(41689291-41689345)
chr5 (350-391)||(754459-754500)
chr5 (335-391)||(12592483-12592539)
chr5 (355-391)||(42977847-42977883)
chr5 (335-389)||(30140518-30140572)
chr5 (349-389)||(33709830-33709870)
chr5 (355-389)||(34715632-34715666)
chr5 (350-390)||(12706087-12706127)
[»] chr4 (31 HSPs)
chr4 (327-391)||(3757734-3757798)
chr4 (327-391)||(51347496-51347560)
chr4 (327-391)||(13171633-13171697)
chr4 (327-391)||(24547339-24547403)
chr4 (327-391)||(50119972-50120036)
chr4 (327-391)||(20588570-20588634)
chr4 (335-391)||(29712386-29712442)
chr4 (335-391)||(30529293-30529349)
chr4 (327-391)||(36743216-36743280)
chr4 (335-389)||(3821215-3821269)
chr4 (335-389)||(39716734-39716788)
chr4 (350-391)||(8956947-8956988)
chr4 (350-391)||(8986919-8986960)
chr4 (350-391)||(37349817-37349858)
chr4 (349-389)||(5752481-5752521)
chr4 (335-391)||(17730449-17730505)
chr4 (335-391)||(24948301-24948357)
chr4 (353-391)||(35716313-35716351)
chr4 (353-391)||(53991566-53991604)
chr4 (335-391)||(578619-578675)
chr4 (350-391)||(9888904-9888945)
chr4 (341-390)||(35833429-35833478)
chr4 (341-389)||(12682772-12682820)
chr4 (335-391)||(39406246-39406302)
chr4 (327-391)||(43021900-43021964)
chr4 (335-389)||(52799041-52799095)
chr4 (352-389)||(15704144-15704181)
chr4 (327-391)||(16895993-16896057)
chr4 (341-389)||(46104201-46104249)
chr4 (335-389)||(35498549-35498603)
chr4 (350-391)||(50033712-50033752)
[»] chr1 (23 HSPs)
chr1 (327-391)||(46626339-46626403)
chr1 (327-391)||(38894763-38894827)
chr1 (327-388)||(19322362-19322423)
chr1 (335-391)||(33075671-33075727)
chr1 (335-391)||(22198922-22198978)
chr1 (341-389)||(47134726-47134774)
chr1 (335-389)||(1367307-1367361)
chr1 (335-391)||(29844896-29844952)
chr1 (335-389)||(4890114-4890168)
chr1 (335-389)||(17364620-17364674)
chr1 (335-389)||(29188317-29188371)
chr1 (335-389)||(33359716-33359770)
chr1 (350-391)||(28570756-28570797)
chr1 (335-391)||(1826809-1826865)
chr1 (335-391)||(10766202-10766258)
chr1 (349-389)||(16300419-16300459)
chr1 (335-389)||(10698135-10698189)
chr1 (335-385)||(52306085-52306135)
chr1 (341-389)||(5426238-5426286)
chr1 (327-391)||(19400739-19400803)
chr1 (335-391)||(42678390-42678446)
chr1 (350-391)||(50557858-50557898)
chr1 (342-390)||(43116071-43116119)
[»] chr7 (22 HSPs)
chr7 (318-391)||(44804519-44804592)
chr7 (335-389)||(11840464-11840518)
chr7 (335-389)||(21600987-21601041)
chr7 (335-391)||(29467767-29467823)
chr7 (335-391)||(35157010-35157066)
chr7 (331-391)||(34872181-34872241)
chr7 (335-389)||(39651165-39651219)
chr7 (349-389)||(688093-688133)
chr7 (335-391)||(3791495-3791551)
chr7 (349-389)||(9143506-9143546)
chr7 (335-391)||(29684128-29684184)
chr7 (335-389)||(17169040-17169094)
chr7 (335-389)||(39276629-39276683)
chr7 (350-391)||(24684648-24684689)
chr7 (341-389)||(49146139-49146187)
chr7 (335-389)||(48529950-48530004)
chr7 (341-389)||(4848370-4848418)
chr7 (350-390)||(42684816-42684856)
chr7 (349-388)||(31900003-31900042)
chr7 (335-389)||(21670809-21670863)
chr7 (353-390)||(47175506-47175543)
chr7 (335-390)||(19052319-19052375)
[»] chr2 (14 HSPs)
chr2 (330-391)||(19486200-19486261)
chr2 (335-391)||(17836983-17837039)
chr2 (327-391)||(10876586-10876648)
chr2 (335-391)||(32677198-32677254)
chr2 (328-391)||(42781020-42781083)
chr2 (335-389)||(2952773-2952827)
chr2 (335-389)||(9545792-9545846)
chr2 (335-389)||(28607237-28607291)
chr2 (335-391)||(9920924-9920980)
chr2 (335-386)||(18096507-18096558)
chr2 (348-391)||(19486126-19486169)
chr2 (335-385)||(10050210-10050260)
chr2 (335-389)||(4292799-4292853)
chr2 (335-389)||(24520882-24520936)
[»] scaffold0009 (2 HSPs)
scaffold0009 (335-389)||(225451-225505)
scaffold0009 (327-391)||(108555-108619)
[»] chr6 (13 HSPs)
chr6 (335-391)||(4897509-4897565)
chr6 (327-391)||(9737767-9737831)
chr6 (349-389)||(6969312-6969352)
chr6 (335-389)||(1218534-1218588)
chr6 (339-389)||(9981276-9981326)
chr6 (335-389)||(15045563-15045617)
chr6 (335-389)||(24443943-24443997)
chr6 (341-389)||(4107976-4108024)
chr6 (335-389)||(18323851-18323905)
chr6 (354-391)||(25529276-25529313)
chr6 (349-389)||(28573845-28573885)
chr6 (352-388)||(33328295-33328331)
chr6 (342-390)||(34316974-34317022)
[»] scaffold0385 (1 HSPs)
scaffold0385 (335-391)||(8315-8371)
[»] scaffold0057 (1 HSPs)
scaffold0057 (335-389)||(20596-20650)
[»] scaffold0759 (1 HSPs)
scaffold0759 (350-389)||(5908-5947)
[»] scaffold0381 (1 HSPs)
scaffold0381 (350-391)||(9600-9641)
[»] scaffold0051 (2 HSPs)
scaffold0051 (341-389)||(62084-62132)
scaffold0051 (350-390)||(53387-53427)
[»] scaffold0069 (1 HSPs)
scaffold0069 (335-389)||(11789-11843)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 45350260 - 45350057
Alignment:
Q  121 gctatggaacgttttgaagaattggtgatgatcgaatgaaacttctatattcatatactatact-----------------acattctatcatttatgtg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||    
T  45350260 gctatggaacgttttgaagaattggtgatgatcgaatgaaacttctatattcatatactatactgcattacatatatacctacattctatcatttatgtg 45350161  T
Q  204 taaatagcttgctgagctattgaagttttttcttatatttgtgctaaatgtgttaagtatatataataaattttatgtaatgttacatttgtttcgtact 303  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45350160 taaatggcttgctgagctattgaaattttttcttatatttgtgctaaatgtgttaagtatatataataaattttatgtaatgttacatttgtttcgtact 45350061  T
Q  304 acaa 307  Q
    ||||    
T  45350060 acaa 45350057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 29530640 - 29530576
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  29530640 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatc 29530576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 35855212 - 35855276
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  35855212 ctaataagaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatc 35855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 26102229 - 26102165
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||    
T  26102229 ctaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatc 26102165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 8528182 - 8528119
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||||||||    
T  8528182 ctaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaat 8528119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 19369012 - 19368956
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  19369012 aaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatc 19368956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 28981896 - 28981832
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  28981896 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 28981832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 8393593 - 8393633
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8393593 ttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 11955596 - 11955540
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  11955596 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatc 11955540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 18682519 - 18682559
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18682519 ttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 22519211 - 22519259
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  22519211 aatgtccattgaatttaccattttgcccctataaggggcaatttagtaa 22519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 22473678 - 22473716
Alignment:
Q  353 atttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22473678 atttaccattttgcccctataaggggcaatttggtaatc 22473716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 19895711 - 19895662
Alignment:
Q  340 aaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  19895711 aaatgtccattgaatttaccattttgcccttataaagggcaatttggtaa 19895662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 48767521 - 48767473
Alignment:
Q  73 accatggcacttcttctcatagtagcaccaaccaatttgccggcaacag 121  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  48767521 accaaggcacttcttctcatagtagctccaaccaatttgccggccacag 48767473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 40832007 - 40831941
Alignment:
Q  325 tcctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||   |||||  |||||||||||||||||| |||||||||| ||||| |||||||    
T  40832007 tcctaataagaaaatccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatc 40831941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 26777908 - 26777867
Alignment:
Q  348 attgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  26777908 attgattttaccattttgcccctatgaggggcaatttggtaa 26777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 4139412 - 4139364
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  4139412 aatgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 9563242 - 9563296
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||||||| ||||||||||||||||| || || ||||| ||||||||    
T  9563242 aaaagagatgtctattaaatttaccattttgcccatagaaagggcattttggtaa 9563296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 11602221 - 11602187
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatt 383  Q
    |||| ||||||||||||||||||||||||||||||    
T  11602221 ttgattttaccattttgcccctataaggggcaatt 11602187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 15321297 - 15321259
Alignment:
Q  352 aatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  15321297 aatttacaattttgcccctataaggggcaatttagtaat 15321259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 55297414 - 55297360
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  | |||||||||||||| ||||||||| ||| ||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaa 55297360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 2847390 - 2847350
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||| ||||||||||||||  |||||||||||||||||    
T  2847390 tgaattttccattttgcccctaagaggggcaatttggtaat 2847350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 53800521 - 53800569
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||| ||  ||||||||||||||||    
T  53800521 aatgtccattgattttaccattttgcccttaggaggggcaatttggtaa 53800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 36776412 - 36776476
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36776412 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 36776476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 40587770 - 40587707
Alignment:
Q  328 taataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40587770 taataagaaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatc 40587707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 24053922 - 24053986
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  24053922 ctaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatc 24053986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 25346050 - 25346106
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatc 25346106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 41972977 - 41973028
Alignment:
Q  340 aaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 41973028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 8760732 - 8760773
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8760732 tgaatttaccattttgcccctataaggggcaatttggtaatc 8760773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 25836321 - 25836280
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25836321 tgaatttaccattttgcccctataaggggcaatttggtaatc 25836280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 9472160 - 9472223
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||    
T  9472160 ctaataagaaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatc 9472223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 45434998 - 45435062
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  45434998 ctaataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatc 45435062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 1942820 - 1942861
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1942820 tgaatttaccattttgcctctataaggggcaatttggtaatc 1942861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 8162831 - 8162790
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  8162831 tgaatttaccattttgcccctataagggtcaatttggtaatc 8162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 40616173 - 40616109
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||  |||||||||||||||||| |||||||| |||||||||||||||    
T  40616173 ctaataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatc 40616109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 42245803 - 42245747
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  ||||||| |||||||||||||||||||||| |||||| |||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatc 42245747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 32844182 - 32844221
Alignment:
Q  352 aatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32844182 aatttaccattttgccccgataaggggcaatttggtaatc 32844221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 18378873 - 18378819
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  ||||||||| ||||||||| |||| ||||||||||||||||    
T  18378873 aaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaa 18378819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 389
Target Start/End: Complemental strand, 25620778 - 25620731
Alignment:
Q  342 atgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  25620778 atgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 44389062 - 44389020
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||    
T  44389062 ttgaatttaccatttttcccttataaggggtaatttggtaatc 44389020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 7389220 - 7389268
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| |||||||||||||||| |  ||||||||||||||||    
T  7389220 aatgtccattgattttaccattttgccccaaggaggggcaatttggtaa 7389268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 19243258 - 19243306
Alignment:
Q  342 atgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    |||||| |||| |||||| |||||||||| | |||||||||||||||||    
T  19243258 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaat 19243306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 19316442 - 19316490
Alignment:
Q  342 atgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    |||||| |||| |||||| |||||||||| | |||||||||||||||||    
T  19316442 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaat 19316490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 25616563 - 25616515
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||| ||  ||||||||||||||||    
T  25616563 aatgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 36887047 - 36886983
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36887047 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 36886983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 30754423 - 30754481
Alignment:
Q  333 agaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  30754423 agaaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatc 30754481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 17643464 - 17643400
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||| |||||||  ||||||||| |||||||||| ||||||||||||||||||||||    
T  17643464 ctaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatc 17643400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 3088102 - 3088048
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  3088102 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3088048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 25698788 - 25698734
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  25698788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 25698734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 6305505 - 6305464
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6305505 tgaatttaccattttgcccctataaggggcaatttggtaatc 6305464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 43138602 - 43138561
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43138602 tgaatttaccattttgcccctataaggggcaatttggtaatc 43138561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 12422401 - 12422359
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  12422401 ttgattttaccattttgcccctataaggggcaatttggtaatc 12422359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 41689291 - 41689345
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  41689291 aaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaa 41689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 754500 - 754459
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  754500 tgaatttaccattttgcccctataagggtcaatttggtaatc 754459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 12592539 - 12592483
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   ||||||||||| ||| ||||||||||||||||||||||||||    
T  12592539 aaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatc 12592483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 42977883 - 42977847
Alignment:
Q  355 ttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatc 42977847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 30140518 - 30140572
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||| ||||||||||    
T  30140518 aaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaa 30140572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 33709870 - 33709830
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  33709870 ttgaatttaccattttacccctataaagggcaatttggtaa 33709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 34715632 - 34715666
Alignment:
Q  355 ttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||| ||||||||||||||||    
T  34715632 ttaccattttgcccctattaggggcaatttggtaa 34715666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 12706127 - 12706087
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  12706127 tgaatttacaattttgcccctagaaggggcaatttagtaat 12706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 3757734 - 3757798
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3757734 ctaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatc 3757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 51347496 - 51347560
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  51347496 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 51347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 13171633 - 13171697
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  13171633 ctaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 13171697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 24547339 - 24547403
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  24547339 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatc 24547403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 50120036 - 50119972
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  50120036 ctaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 50119972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 20588570 - 20588634
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  20588570 ctaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatc 20588634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 29712386 - 29712442
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  29712386 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatc 29712442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 30529349 - 30529293
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  30529349 aaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatc 30529293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 36743280 - 36743216
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  || |||||||||||||| | |||||||||||||||||||||||    
T  36743280 ctaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatc 36743216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 3821269 - 3821215
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  3821269 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3821215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 39716788 - 39716734
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  39716788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 39716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 8956947 - 8956988
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8956947 tgaatttaccattttgcccctataaggggcaatttggtaatc 8956988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 8986919 - 8986960
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8986919 tgaatttaccattttgcccctataaggggcaatttggtaatc 8986960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 37349817 - 37349858
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37349817 tgaatttaccattttgcccctataaggggcaatttggtaatc 37349858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 5752481 - 5752521
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5752481 ttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 17730449 - 17730505
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatc 17730505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 24948357 - 24948301
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||    
T  24948357 aaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatc 24948301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 35716351 - 35716313
Alignment:
Q  353 atttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35716351 atttaccattttgcccctataaggggcaatttggtaatc 35716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 53991604 - 53991566
Alignment:
Q  353 atttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53991604 atttaccattttgcccctataaggggcaatttggtaatc 53991566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 578675 - 578619
Alignment:
Q  335 aaaagaaatgtct-attgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  578675 aaaagaaatgtctcattga-tttaccattttgcccctataagggacaatttggtaatc 578619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 9888945 - 9888904
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  9888945 tgaatttaccattttgcccctataagggtcaatttggtaatc 9888904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 35833478 - 35833429
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  35833478 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaat 35833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 12682820 - 12682772
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  12682820 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 39406302 - 39406246
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||   ||||||||||||||| |||||||||||||| ||||||||||||    
T  39406302 aaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatc 39406246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 43021900 - 43021964
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||   ||||||||||||| ||||| |||| ||| ||||||||||||||    
T  43021900 ctaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatc 43021964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 52799041 - 52799095
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  || ||||||||||||| ||||||| ||||||||||||||||    
T  52799041 aaaagaaatgtcctttaaatttaccattttacccctattaggggcaatttggtaa 52799095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 15704144 - 15704181
Alignment:
Q  352 aatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  15704144 aatttaccattttgcccctataaggggaaatttggtaa 15704181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 16895993 - 16896057
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||  |||||||||| ||||||||| |||||||||| |||||||||||    
T  16895993 ctaataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatc 16896057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 46104201 - 46104249
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  46104201 aatgtccattgattttaccattttgccccaatgaggggcaatttggtaa 46104249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 35498603 - 35498549
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||| |  ||||||||| |||||||||||||||| || |||||||||||    
T  35498603 aaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaa 35498549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 50033712 - 50033752
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  50033712 tgaatttaccattttgcccttataa-gggcaatttggtaatc 50033752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 46626403 - 46626339
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  46626403 ctaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 46626339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 38894763 - 38894827
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38894763 ctaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatc 38894827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 19322423 - 19322362
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggta 388  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  19322423 ctaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggta 19322362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 33075727 - 33075671
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33075727 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 33075671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 22198978 - 22198922
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  22198978 aaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatc 22198922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 47134726 - 47134774
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47134726 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 47134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 1367307 - 1367361
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  1367307 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 29844952 - 29844896
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  29844952 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatc 29844896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 4890114 - 4890168
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  4890114 aaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 17364674 - 17364620
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||    
T  17364674 aaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 17364620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 29188371 - 29188317
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  29188371 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 33359716 - 33359770
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  33359716 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 33359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 28570756 - 28570797
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  28570756 tgaatttaccattttgcccctataagggtcaatttggtaatc 28570797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 1826809 - 1826865
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||| ||||||  ||||||||||||||||| | |||||||||||||||||||||||    
T  1826809 aaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatc 1826865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 10766202 - 10766258
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   || ||||||||||||||||||||||||| |||||||||||||    
T  10766202 aaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaatc 10766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 16300419 - 16300459
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  16300419 ttgaatttaccattttgctcctataaggggcaatttggtaa 16300459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 10698189 - 10698135
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||| | | |||||||||||||||||||| |||||||| ||||||||    
T  10698189 aaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaa 10698135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 52306085 - 52306135
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttg 385  Q
    ||||||||| ||  || ||||||||||||||||||||||||||||||||||    
T  52306085 aaaagaaatatccctttaatttaccattttgcccctataaggggcaatttg 52306135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 5426238 - 5426286
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||| || |||||||||||||||||    
T  5426238 aatgtccattgattttaccattttgcccttagaaggggcaatttggtaa 5426286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 19400739 - 19400803
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||  |||||||||||||||||||| ||||||||| |||| |||||||    
T  19400739 ctaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatc 19400803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 42678390 - 42678446
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   |||||||||||||||  ||||||||||||||||||| |||||    
T  42678390 aaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatc 42678446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 50557858 - 50557898
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  50557858 tgaatttaccattttgtcc-tataaggggcaatttggtaatc 50557898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 43116071 - 43116119
Alignment:
Q  342 atgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||| ||||||||| | ||||||||||||  |||||||||||||||||    
T  43116071 atgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 44804519 - 44804592
Alignment:
Q  318 gtctatttcctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||| | ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  44804519 gtctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatc 44804592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 11840518 - 11840464
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11840518 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 11840464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 21601041 - 21600987
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21601041 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 21600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 29467767 - 29467823
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29467767 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 29467823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 35157066 - 35157010
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatc 35157010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 34872181 - 34872241
Alignment:
Q  331 taagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||    
T  34872181 taagaaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatc 34872241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 39651219 - 39651165
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  39651219 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 39651165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 688093 - 688133
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  688093 ttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 3791495 - 3791551
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  3791495 aaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatc 3791551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 9143506 - 9143546
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggtaa 9143546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 29684184 - 29684128
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||   |||||||||||||||| ||||||||||||||||||||||||||    
T  29684184 aaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatc 29684128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 17169040 - 17169094
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  17169040 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 17169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 39276629 - 39276683
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||    
T  39276629 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 39276683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 24684689 - 24684648
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  24684689 tgaatttaccattttgcctctataaggggcaatttggtaatc 24684648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 49146187 - 49146139
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  49146187 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 48530004 - 48529950
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  ||||| ||||||||||||||||||  |||||||||||||||    
T  48530004 aaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaa 48529950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 4848370 - 4848418
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||||||||||    
T  4848370 aatgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 42684816 - 42684856
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  42684816 tgaatttaccattttgcccctataaggggcattttagtaat 42684856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 31900042 - 31900003
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggta 388  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  31900042 ttgaatttacaattttgcccctattaggggcaatttggta 31900003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 21670863 - 21670809
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||| ||||||||||||||| ||  ||||||||||    
T  21670863 aaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaa 21670809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 47175543 - 47175506
Alignment:
Q  353 atttaccattttgcccctataaggggcaatttggtaat 390  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  47175543 atttacaattttgcccctagaaggggcaatttggtaat 47175506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 19052375 - 19052319
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccc-tataaggggcaatttggtaat 390  Q
    |||||| ||||| ||||||||| | |||||||||| ||| |||||||||||||||||    
T  19052375 aaaagagatgtccattgaatttccaattttgccccatatgaggggcaatttggtaat 19052319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 19486200 - 19486261
Alignment:
Q  330 ataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  19486200 ataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 19486261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 17836983 - 17837039
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17836983 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 17837039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 10876648 - 10876586
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||    
T  10876648 ctaataagaaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatc 10876586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 32677254 - 32677198
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  32677254 aaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 32677198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 42781020 - 42781083
Alignment:
Q  328 taataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||    
T  42781020 taataagaaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatc 42781083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 2952773 - 2952827
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  2952773 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 9545846 - 9545792
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  9545846 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 28607237 - 28607291
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28607237 aaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 9920980 - 9920924
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  9920980 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatc 9920924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 18096507 - 18096558
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttgg 386  Q
    ||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  18096507 aaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 19486169 - 19486126
Alignment:
Q  348 attgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  19486169 attgaatttatcattttgcccctataaggggcaatttggtaatc 19486126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 10050260 - 10050210
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttg 385  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  10050260 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttg 10050210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 4292853 - 4292799
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||| ||||| | ||||||||||||||    
T  4292853 aaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaa 4292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 24520882 - 24520936
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||  |||||||| |||||||| ||||||||||||    
T  24520882 aaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaa 24520936  T

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Target: scaffold0009 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 225451 - 225505
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  225451 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 225505  T

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Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 108555 - 108619
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||||||||||||| ||| |||||||| ||||||||||||    
T  108555 ctaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatc 108619  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 4897565 - 4897509
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  4897565 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 4897509  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 9737831 - 9737767
Alignment:
Q  327 ctaataagaaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||    
T  9737831 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatc 9737767  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 6969352 - 6969312
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6969352 ttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 1218534 - 1218588
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  1218534 aaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 9981326 - 9981276
Alignment:
Q  339 gaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  9981326 gaaatgttcattgaatttaccattttacccctataaggggcaatttggtaa 9981276  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 15045617 - 15045563
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||    
T  15045617 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 24443943 - 24443997
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||    
T  24443943 aaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 4107976 - 4108024
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||||||    
T  4107976 aatgtccattgattttaccatttttcccctatgaggggcaatttggtaa 4108024  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 18323851 - 18323905
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| |   ||||||||||||    
T  18323851 aaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaa 18323905  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 25529276 - 25529313
Alignment:
Q  354 tttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  25529276 tttacgattttgctcctataaggggcaatttggtaatc 25529313  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 28573885 - 28573845
Alignment:
Q  349 ttgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaa 28573845  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 33328331 - 33328295
Alignment:
Q  352 aatttaccattttgcccctataaggggcaatttggta 388  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  33328331 aatttaccattttgctcctacaaggggcaatttggta 33328295  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 34316974 - 34317022
Alignment:
Q  342 atgtctattgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||| ||||| |||||| |||||||||||  |||||||||||||||||    
T  34316974 atgtccattgattttacctttttgcccctaagaggggcaatttggtaat 34317022  T

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Target: scaffold0385 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 8371 - 8315
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  8371 aaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatc 8315  T

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Target: scaffold0057 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 20650 - 20596
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  20650 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

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Target: scaffold0759 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 5947 - 5908
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5947 tgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

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Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 9600 - 9641
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaatc 391  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  9600 tgaatttaccattttgcccctataagggtcaatttggtaatc 9641  T

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Target: scaffold0051 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 62084 - 62132
Alignment:
Q  341 aatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  62084 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 62132  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 53387 - 53427
Alignment:
Q  350 tgaatttaccattttgcccctataaggggcaatttggtaat 390  Q
    ||||||| | |||||||||||| ||||||||||||||||||    
T  53387 tgaatttccaattttgcccctagaaggggcaatttggtaat 53427  T

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Target: scaffold0069 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 11789 - 11843
Alignment:
Q  335 aaaagaaatgtctattgaatttaccattttgcccctataaggggcaatttggtaa 389  Q
    ||||||||||||  |||||||||||||||||||  ||| ||||||||||||||||    
T  11789 aaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggtaa 11843  T

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