View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_57 (Length: 378)
Name: NF0743_low_57
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 81 - 378
Target Start/End: Complemental strand, 50388902 - 50388595
Alignment:
| Q |
81 |
ttttcttcataaccacaacctccaacacaagcaagagaatccaaaatttaaaacaccttgcctagccaaattatcttttattcaaagaaacaattttaat |
180 |
Q |
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| T |
50388902 |
ttttcatcacaaccacaacctccaacacaagcaagagaatccaaaatttaaaacaccttgcctagccaaattatcttttattcaaagaaacaattttaat |
50388803 |
T |
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| Q |
181 |
tattccaaattatatctttgatttctgaggctctagcagatgaatcatgtgagagaaactgaattctagttggttatattatacttcaagtgaaaatgaa |
280 |
Q |
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| T |
50388802 |
tattccaaattatatctttgatttctgaggctctagcagatgaatcatgtgagagaaactgaattctagatggttatattatacttcaagtgaaaatgaa |
50388703 |
T |
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| Q |
281 |
tga----------caatttcattttaaaaatgatcaatttccatttacaaagtatcaaaacaaatatttgatcgtgcgtaaatatgaattttttgcggag |
370 |
Q |
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| T |
50388702 |
tgattttgagatttaatttcattttaaaaatgatcaatttccatttacaaagtatcaaaacaaatatttgatcgtacgtaaatatgaattttttgtagag |
50388603 |
T |
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| Q |
371 |
tatctaaa |
378 |
Q |
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| T |
50388602 |
tatctaaa |
50388595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 50383640 - 50383523
Alignment:
| Q |
180 |
ttattccaaattatatctttgatttctgaggctctagcagatgaatcatgtgagagaaactgaattctagttggttatattatacttcaagtgaaaatga |
279 |
Q |
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| T |
50383640 |
ttatttcaaattatatttttaacttatgaggctctggcctatgaatcctgtaagagaaacggaattctgaatcggtatataattcttcaagggaaaatca |
50383541 |
T |
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| Q |
280 |
atgacaatttcattttaa |
297 |
Q |
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| T |
50383540 |
atgacaatttcattttaa |
50383523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 2122375 - 2122347
Alignment:
| Q |
16 |
atcaccagtaccacacacaactccaactc |
44 |
Q |
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| T |
2122375 |
atcaccagtaccacacacaactccaactc |
2122347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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