View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_59 (Length: 377)
Name: NF0743_low_59
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 36342864 - 36343079
Alignment:
| Q |
69 |
gagagaaaagaaaaatattaatgatgtattggtattataaagtgacatgtaataagttaaaaataannnnnnnnnnnaaagtgacttatattaaaataag |
168 |
Q |
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| T |
36342864 |
gagagaaaagaaaaatattaatgatgtattggtattataaagagacatgtaataagttaattttt-tttttttttttaaagtgacttatattaaaacaag |
36342962 |
T |
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| Q |
169 |
gatgaatcttgttnnnnnnnntaaagggacaacaatggaggaagcactatgtagatatttttggatacttttaaaaattaacataataaagtgatgttat |
268 |
Q |
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| T |
36342963 |
gatgaatcttgttaaaaaaa-taaagggacaacaatggaggaagcactatgtagatatttgtggatacttttaaaaattaacataataaagtgatgttat |
36343061 |
T |
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| Q |
269 |
ggtgtgatttaattaatg |
286 |
Q |
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| T |
36343062 |
ggtgtgatttaattaatg |
36343079 |
T |
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