View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_6 (Length: 622)

Name: NF0743_low_6
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_6
NF0743_low_6
[»] chr1 (3 HSPs)
chr1 (353-502)||(24117418-24117569)
chr1 (367-433)||(22789145-22789210)
chr1 (402-505)||(39845280-39845387)
[»] chr3 (2 HSPs)
chr3 (352-511)||(6861187-6861349)
chr3 (396-505)||(20766876-20766985)
[»] chr6 (5 HSPs)
chr6 (94-149)||(6761813-6761868)
chr6 (368-505)||(28669255-28669392)
chr6 (414-474)||(33593254-33593315)
chr6 (426-505)||(7622034-7622115)
chr6 (400-475)||(4596935-4597011)
[»] chr5 (4 HSPs)
chr5 (396-503)||(13341719-13341828)
chr5 (395-502)||(29270093-29270204)
chr5 (419-505)||(19377589-19377677)
chr5 (424-476)||(15446188-15446241)
[»] chr2 (2 HSPs)
chr2 (241-446)||(19245415-19245628)
chr2 (396-511)||(27749809-27749926)
[»] chr7 (2 HSPs)
chr7 (367-509)||(8304012-8304153)
chr7 (395-443)||(17809230-17809278)
[»] chr8 (4 HSPs)
chr8 (199-263)||(26575433-26575498)
chr8 (352-423)||(26879497-26879569)
chr8 (352-429)||(26575248-26575323)
chr8 (94-179)||(27813470-27813554)
[»] chr4 (1 HSPs)
chr4 (412-505)||(18437638-18437733)
[»] scaffold0526 (1 HSPs)
scaffold0526 (396-475)||(8120-8199)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 353 - 502
Target Start/End: Original strand, 24117418 - 24117569
Alignment:
Q  353 gcatctaggctttgctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttg-tagaca 451  Q
    ||||||||| |||||||||||| |||||||||| |||| | |||| ||||||||| ||||||||||||| ||||||||||| |||||||| || ||| ||    
T  24117418 gcatctaggatttgctttaagtattttgttagggatctagtcttt-gccttgaaacttaatagtcacttcctcacttatgatcaagtattatgttaggca 24117516  T
Q  452 tgtaggatttgc--tttaagtatttttactcggttttttatcattattatgac 502  Q
    | ||||||||||  ||||| ||||||  || |||| |||||||||||||||||    
T  24117517 tctaggatttgcattttaaatattttatctaggttgtttatcattattatgac 24117569  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 22789145 - 22789210
Alignment:
Q  367 ctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatga 433  Q
    |||||||| ||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||||    
T  22789145 ctttaagtattttgttaggcatctagtttttt-ccttgaaacttaatagtcacttactcacttatga 22789210  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 505
Target Start/End: Complemental strand, 39845387 - 39845280
Alignment:
Q  402 ttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc---tttaagtatttttactcggttttttatcattatt 497  Q
    |||||| |||| |||||||||||||||||||| |||||||||  |  | ||| ||||||||||   ||||||||||||  || |||| |||| |||||||    
T  39845387 ttgaaacttaagagtcacttactcacttatgatcaagtatttaatcgggcatctaggatttgcctttttaagtattttgtctaggttgtttagcattatt 39845288  T
Q  498 atgactac 505  Q
    ||||||||    
T  39845287 atgactac 39845280  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 352 - 511
Target Start/End: Complemental strand, 6861349 - 6861187
Alignment:
Q  352 tgcatctaggctttgc-tttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-aga 449  Q
    ||||||||| |||||| |||| || ||||||||||||||| | || || | ||||||||||||||||||||| |||||||||| ||||| |||||| |||    
T  6861349 tgcatctagactttgcctttatgtattttgttaggcatctagtctcttactttgaaatttaatagtcacttaatcacttatgatcaagtgttttgtcaga 6861250  T
Q  450 catgtaggatttg-ctttaagtatttttactcggttttttatcattattatgactaccaaata 511  Q
    ||| ||||||| | |||| ||||||||  || |||| |||| ||||||||||| ||| |||||    
T  6861249 catctaggattcgcctttgagtattttgtctaggttgtttagcattattatgattactaaata 6861187  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 20766985 - 20766876
Alignment:
Q  396 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttg-tagacatgtaggatttg-ctttaagtatttttactcggttttttatcat 493  Q
    |||||||||||| ||||||||  || |||||||| ||| ||||||||||| ||| ||| ||| ||||| |||| ||||||||   | |||| |||| |||    
T  20766985 tttgccttgaaacttaatagt--ctaactcacttgtgatcaagtattttgttaggcatctagaatttgcctttgagtattttgtttaggttgtttaacat 20766888  T
Q  494 tattatgactac 505  Q
    ||||||||||||    
T  20766887 tattatgactac 20766876  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 6761868 - 6761813
Alignment:
Q  94 aaaggtaccctttctgtttgcattgataatgttatgtattctagttttagattgtt 149  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6761868 aaaggtaccctttctgtttgcattgataatgttatatagtctagttttagattgtt 6761813  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 505
Target Start/End: Original strand, 28669255 - 28669392
Alignment:
Q  368 tttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttg-ctt 465  Q
    ||||||| ||||| ||||||||| | ||||  |||||||| |||||||||||||| || |||||| | ||||||||||| | |||| ||||||||| |||    
T  28669255 tttaagtattttggtaggcatctagtctttc-ccttgaaacttaatagtcacttattcgcttatg-ataagtattttgtcacacatctaggatttgcctt 28669352  T
Q  466 taagtatttttactcggttttttatcattattatgactac 505  Q
    ||||||||||  ||  ||| ||||  ||||||||||||||    
T  28669353 taagtattttgtctaagttgtttagtattattatgactac 28669392  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 33593315 - 33593254
Alignment:
Q  414 agtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgctttaagtattt 474  Q
    |||||||||||||||||||| ||| ||||||||  | ||| |||||||||||||||||||||    
T  33593315 agtcacttactcacttatgatcaaatattttgtcgggcatctaggatttgctttaagtattt 33593254  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 7622115 - 7622034
Alignment:
Q  426 acttatgaacaagtattttgtaga-catgtaggatttgc-tttaagtatttttactcggttttttatcattattatgactac 505  Q
    |||||||| |||||||||||| || ||| |||||||||| ||||| ||||||  || |||| ||||||||||| ||||||||    
T  7622115 acttatgatcaagtattttgtcgagcatttaggatttgcctttaaatattttgtctaggttgtttatcattatcatgactac 7622034  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 4597011 - 4596935
Alignment:
Q  400 ccttgaaatttaatagtcacttactcacttatgaacaagtattttgta-gacatgtaggatttgctttaagtatttt 475  Q
    |||| ||| |||||||||| ||||||| |||||| ||| ||||||||  | ||| |||||||| |||||||||||||    
T  4597011 ccttaaaacttaatagtcatttactcatttatgatcaattattttgtctggcatctaggatttactttaagtatttt 4596935  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 503
Target Start/End: Complemental strand, 13341828 - 13341719
Alignment:
Q  396 tttgccttgaaatttaat-agtcacttactcacttatgaacaagtattttgta-gacatgtaggatttgctttaagtatttttactcggttttttatcat 493  Q
    |||||||||||| ||||  |||||||||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||  || |||  |||| |||    
T  13341828 tttgccttgaaacttaaagagtcacttactcacttatgatcaagtactttgtaaggcatctaggatttgctttaagtattttgtctaggtcgtttagcat 13341729  T
Q  494 tattatgact 503  Q
    ||||||||||    
T  13341728 tattatgact 13341719  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 502
Target Start/End: Original strand, 29270093 - 29270204
Alignment:
Q  395 ttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc---tttaagtatttttactcggttttttat 490  Q
    |||||||||||||  |||||| ||||| ||||||||||| |||||||||||| |||||| || ||||| |   ||||||||||||  || |||| ||||     
T  29270093 ttttgccttgaaacgtaatagacactttctcacttatgatcaagtattttgtgagacatttaagattttcctttttaagtattttatctaggttgtttag 29270192  T
Q  491 cattattatgac 502  Q
    ||||||||||||    
T  29270193 cattattatgac 29270204  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 19377589 - 19377677
Alignment:
Q  419 cttactcacttatgaacaagtattttgt-agacatgtaggatttgc-tttaagtatttttactcggttttttatcattattatgactac 505  Q
    ||||||||||| ||| |||||||||||| || ||| |||||||| | ||||||||||||  || |||| |||| |||||||||||||||    
T  19377589 cttactcacttgtgatcaagtattttgtcaggcatctaggatttacctttaagtattttgtctaggttgtttaacattattatgactac 19377677  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 15446188 - 15446241
Alignment:
Q  424 tcacttatgaacaagtattttgtagacatgtaggatttg-ctttaagtattttt 476  Q
    |||||||||| ||||||||||||||| || ||||||||| ||||||| ||||||    
T  15446188 tcacttatgatcaagtattttgtagatatctaggatttgtctttaagcattttt 15446241  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 446
Target Start/End: Original strand, 19245415 - 19245628
Alignment:
Q  241 ttttcttttattctttcacaccaaacagtccgttcac---aagagattgatgaagaccaacgtgttgatatatgatggtggataattcatatatctgatg 337  Q
    |||| |||||||||||||||||  ||||||  |||||   ||||||||||||||||| |||||||||||||  ||| | ||||||| ||||||  |||      
T  19245415 tttttttttattctttcacaccgcacagtctcttcaccgtaagagattgatgaagacgaacgtgttgatat--gataggggataatccatataattgaca 19245512  T
Q  338 attttttcgtgt------aatgcatctaggctttgcttt-aagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcactta 430  Q
    |||| ||||||       | |||||||| | |||||||| || | ||||||||||||||| | |||||| ||||||| |||| ||||||| ||| |||||    
T  19245513 atttcttcgtgatttatgattgcatctatgttttgcttttaaatattttgttaggcatctagtcttttgtcttgaaacttaacagtcactcacttactta 19245612  T
Q  431 tgaacaagtattttgt 446  Q
    ||| ||| ||||||||    
T  19245613 tgatcaaatattttgt 19245628  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 511
Target Start/End: Complemental strand, 27749926 - 27749809
Alignment:
Q  396 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtagga-tttgctttaagtatttttactcggttttttatcat 493  Q
    |||||||||||| ||||||| |||||| ||| |||||| |||||||||||| |||||| || || ||| |||||||||||||   | |||| |||| |||    
T  27749926 tttgccttgaaacttaatagccacttagtcatttatgatcaagtattttgtcagacatatatgattttcctttaagtattttgtttaggttgtttaacat 27749827  T
Q  494 tattatgactaccaaata 511  Q
    |||||||||||| |||||    
T  27749826 tattatgactactaaata 27749809  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 367 - 509
Target Start/End: Original strand, 8304012 - 8304153
Alignment:
Q  367 ctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc-t 464  Q
    |||||| | ||||||||||||||| | |||| || |||||||||||||| |  |||||||||| ||| |||||||||| | ||  || |||||||||| |    
T  8304012 ctttaaatattttgttaggcatctagtctttggc-ttgaaatttaatagcc--ttactcacttgtgatcaagtattttatcaggtatctaggatttgcct 8304108  T
Q  465 ttaagtatttttactcggttttttatcattattatgactaccaaa 509  Q
    |||||||||||  || |||| |||| |||||||||||||||||||    
T  8304109 ttaagtattttgtctaggttgtttagcattattatgactaccaaa 8304153  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 17809278 - 17809230
Alignment:
Q  395 ttttgccttgaaatttaatagtcacttactcacttatgaacaagtattt 443  Q
    ||||||||| ||| |||| |||||||||||||||| ||| |||||||||    
T  17809278 ttttgccttaaaacttaagagtcacttactcacttgtgatcaagtattt 17809230  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 26575498 - 26575433
Alignment:
Q  199 tttgtatcagttacccggttctaaaaatacatcaaa-accaagttttcttttattctttcacacca 263  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||    
T  26575498 tttgtatcagtgacccggttctataaatacataaaataccaagtttctttttattctttcacacca 26575433  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 423
Target Start/End: Original strand, 26879497 - 26879569
Alignment:
Q  352 tgcatctaggctttgct-ttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttac 423  Q
    ||||||||||||||||  || ||| ||||||||||||||| | ||||| |||||||| |||||||||||||||    
T  26879497 tgcatctaggctttgcccttgagtattttgttaggcatctagtctttttccttgaaacttaatagtcacttac 26879569  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 26575323 - 26575248
Alignment:
Q  352 tgcatctaggctttgctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcactt 429  Q
    ||||||||| |||||||||| || ||||||||||||||| | | ||||  |||||| |||||||||||||||||||||    
T  26575323 tgcatctagactttgctttatgtattttgttaggcatctagtc-tttggtttgaaa-ttaatagtcacttactcactt 26575248  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 27813554 - 27813470
Alignment:
Q  94 aaaggtaccctttctgtttgcattgataatgttatgtattctagttttagattgtttggctgttagtagcatattttgatcaattt 179  Q
    ||||||| |||||||||||||||||||||| ||   || ||| |||||||||||||| | ||||||| ||| |||||||| |||||    
T  27813554 aaaggtatcctttctgtttgcattgataatattgcatactctggttttagattgttt-gttgttagtcgcagattttgattaattt 27813470  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 18437733 - 18437638
Alignment:
Q  412 atagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttg-ctttaagtatttttactcggttttttatcattattatgactac 505  Q
    |||| ||||| ||||||||||| |||||||||||| | |||| ||||||||| |||||||||||||   | |||| |||| |||||| ||||||||    
T  18437733 atagccactttctcacttatgatcaagtattttgtcaaacatctaggatttgtctttaagtattttgtttaggttgtttaacattatcatgactac 18437638  T

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Target: scaffold0526 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 8120 - 8199
Alignment:
Q  396 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtagga-tttgctttaagtatttt 475  Q
    |||||||||||| ||||||| |  |||||||||| ||| |||||||||||| |||||| ||||| ||| |||||||||||||    
T  8120 tttgccttgaaacttaatagcc--ttactcacttgtgatcaagtattttgtcagacatttaggattttcctttaagtatttt 8199  T

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