View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_61 (Length: 373)
Name: NF0743_low_61
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 7332949 - 7332721
Alignment:
| Q |
19 |
atcatagggagacacataccgaccctaactacggcgatgacggcggaagagacggcggagtcagcgatctcagtagtcccagaggaattgttgattgaaa |
118 |
Q |
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| T |
7332949 |
atcattgggagacacataccgaccctaactacggcgatgacggcggaagagacggcggagtcaccgatctcagtagtcccagaggaattgttgattgaaa |
7332850 |
T |
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| Q |
119 |
tcctttatagaattgataatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgctgggaagcttttagagat |
218 |
Q |
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| T |
7332849 |
tcttttatagaattgataatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgctgggaagcttttagagat |
7332750 |
T |
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| Q |
219 |
tcacggacattcccttcctatatgcaaag |
247 |
Q |
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| T |
7332749 |
tcacggatattccctttctatatgcaaag |
7332721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 7323316 - 7323252
Alignment:
| Q |
136 |
aatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgc |
200 |
Q |
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| T |
7323316 |
aatactctgcaattgaggtgcgtttgcaacttgtggaattcgctagttcttgatcctcaattcgc |
7323252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 7370944 - 7370907
Alignment:
| Q |
136 |
aatactctgcaattgaggtgcgtttgcaagttgtggaa |
173 |
Q |
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| T |
7370944 |
aatactctgcaattgaggtgtgtttgcaagttgtggaa |
7370907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 7375743 - 7375694
Alignment:
| Q |
141 |
tctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatc |
190 |
Q |
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| T |
7375743 |
tctgcaattgagatgcgtttgcaagttgtggaattcgctggttgttgatc |
7375694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 7908071 - 7908120
Alignment:
| Q |
141 |
tctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatc |
190 |
Q |
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| T |
7908071 |
tctgcaattgaggtgcgtatgcaagtggtggaaatcacttgttcttgatc |
7908120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 6828642 - 6828729
Alignment:
| Q |
95 |
tcccagaggaattgttgattgaaatcctttatag-----aattgataa-tactctgcaattgaggtgcgtttgcaagttgtggaaatc |
176 |
Q |
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| T |
6828642 |
tcccggaggaagtgatgattgaaatcctttatagggttgaattgaacagtactctgcaattgaggtgtgtttgcaaattgtggaaatc |
6828729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 7342307 - 7342220
Alignment:
| Q |
95 |
tcccagaggaattgttgattgaaatcctttatagaattgat--aa----tactctgcaattgaggtgcgtttgcaagttgtggaaatc |
176 |
Q |
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| T |
7342307 |
tcccagaggaattgatgattgaaatcctttctagggttgagtcaagcgttactctgcaactgaggtgcgtttccaagttgtggaaatc |
7342220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 30411909 - 30411864
Alignment:
| Q |
148 |
ttgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatg |
193 |
Q |
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| T |
30411909 |
ttgaggtgcatttgtaagttgtggaaatcactagttgttgatcatg |
30411864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 13246250 - 13246188
Alignment:
| Q |
136 |
aatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattc |
198 |
Q |
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| T |
13246250 |
aatactctccaattaaggtgcgtttgcaagtcatagaaatcgctggttgttgatcctgaattc |
13246188 |
T |
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