View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_69 (Length: 361)
Name: NF0743_low_69
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 27 - 351
Target Start/End: Original strand, 31719121 - 31719445
Alignment:
| Q |
27 |
agaaacaaacaattacatagaatatagttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacct |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719121 |
agaaacaaacaattacatagaatatagttcatgtgaagccaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacct |
31719220 |
T |
|
| Q |
127 |
ttagacacttgacgagcctttggaatccgtttcataccaaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||| |
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| T |
31719221 |
ttagacacttgacgagcctttggaatccgtttcataccaaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttca |
31719320 |
T |
|
| Q |
227 |
tatatgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatctcagctttgggcttgttctgatcttccaatccctacgtggacttct |
326 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719321 |
tatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccctacgtggacttct |
31719420 |
T |
|
| Q |
327 |
catccgaattacctgcatcttcttt |
351 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
31719421 |
catccgaattacctgcatcttcttt |
31719445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 40 - 331
Target Start/End: Original strand, 31721733 - 31722030
Alignment:
| Q |
40 |
tacatagaatatagttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------aca |
133 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
31721733 |
tacatggaatatagttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagaca |
31721832 |
T |
|
| Q |
134 |
cttgacgagcctttggaatccgtttcataccaaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| || |
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| T |
31721833 |
cttgacgagcctttggaatccgtttcataccaaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgt |
31721932 |
T |
|
| Q |
234 |
attcttgacttttgtcaacaatttcaatggtgatcttatcatccatctcagctttgggcttgttctgatcttccaatccctacgtggacttctcatcc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721933 |
attcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccctacgtggacttctcatcc |
31722030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 40 - 331
Target Start/End: Original strand, 31711027 - 31711324
Alignment:
| Q |
40 |
tacatagaatatagttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------aca |
133 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
31711027 |
tacatggaatatagttcatgtgaagccaccaaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagaca |
31711126 |
T |
|
| Q |
134 |
cttgacgagcctttggaatccgtttcataccaaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||| || |
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| T |
31711127 |
cttgacgagcctttggaatccgtttcataccaaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgt |
31711226 |
T |
|
| Q |
234 |
attcttgacttttgtcaacaatttcaatggtgatcttatcatccatctcagctttgggcttgttctgatcttccaatccctacgtggacttctcatcc |
331 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711227 |
attcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccctacgtggacttctcatcc |
31711324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 28 - 350
Target Start/End: Original strand, 31716185 - 31716498
Alignment:
| Q |
28 |
gaaacaaacaattacatagaatatagt----tcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataa |
123 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| ||| |||||||||||||| || ||||||||||||||| |
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| T |
31716185 |
gaaacaaacaattacatgaaatatagtacgttcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataa |
31716284 |
T |
|
| Q |
124 |
cctttagacacttgacgagcctttggaatccgtttcataccaaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagt |
223 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||| |
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| T |
31716285 |
cctttagatacttgacgagcctttggaatccttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagt |
31716384 |
T |
|
| Q |
224 |
tcatatatgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatctcagctttgggcttgttctgatcttccaatccctacgtggact |
323 |
Q |
| |
|
||||||| |||||||||| |||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
31716385 |
tcatataagtattcttgatttttgtcacc-------------atcttatcatccatcttagctttggacttgttctgatcttccaatccctacgtggact |
31716471 |
T |
|
| Q |
324 |
tctcatccgaattacctgcatcttctt |
350 |
Q |
| |
|
||||||||| || | |||||||||||| |
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| T |
31716472 |
tctcatccgtatgatctgcatcttctt |
31716498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 31730238 - 31730169
Alignment:
| Q |
54 |
ttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataa |
123 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
31730238 |
ttcatgagaagcaaccaaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa |
31730169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 31726184 - 31726049
Alignment:
| Q |
50 |
atagttcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttgg |
149 |
Q |
| |
|
|||||||||| ||||| | ||| | ||| ||||||||| |||| ||| || |||| |||||||||| | |||| | ||||| |||||| |||||||||| |
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|
| T |
31726184 |
atagttcatgagaagccatcaaagcctttgaaatctcatatatgagcttaacctccaacgcatcactggcataatccttagaaacttgaggagcctttgg |
31726085 |
T |
|
| Q |
150 |
aatccgtttcataccaaacttgttatcagtgttcaa |
185 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||| |
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|
| T |
31726084 |
aatctgtttcccaccaaagatgttatcagtgttcaa |
31726049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 31726041 - 31725929
Alignment:
| Q |
214 |
aacataaagttcatatatgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatctcagctttgggcttgttctgatcttccaatccc |
313 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||| ||||| | |
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| T |
31726041 |
aacataaagttcatataacccttcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcctccaaaact |
31725942 |
T |
|
| Q |
314 |
tacgtggacttct |
326 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
31725941 |
tacgtgggcttct |
31725929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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