View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_7 (Length: 622)
Name: NF0743_low_7
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 40 - 617
Target Start/End: Original strand, 43059685 - 43060273
Alignment:
| Q |
40 |
tgttctttgcaggggttgattgattatggtttaaagctgaacaaaagatgtttttattttaagattgtctgcatttttcacaaaattggtctattaaatt |
139 |
Q |
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| T |
43059685 |
tgttctttgcaggggttgattgattatggtttaaagctgaacaaaagatgattttattttaagattgtatgcatttttcacaaaattggtctattaaatt |
43059784 |
T |
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| Q |
140 |
tgcgaattcaaaatactaattatgtgctgtattattttctttagcacattgctgacaggctgcaattgcatccgcataatgaggcgagagtttgtactct |
239 |
Q |
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| T |
43059785 |
tgcgaattcaaaatactaattatgtgctgcattattttctttagcacattgctgacaggctgcaattgcatccgcataatgaggcgagagtttgtactct |
43059884 |
T |
|
| Q |
240 |
tttgagtaaaaaattgtttccactcagtagtcttccttttcctgagaggttcaggtagattactcatctg--------tattccttgggtctgtaatgaa |
331 |
Q |
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| T |
43059885 |
tttgagcaaaaaattgtttccactcagtagtcttccttttcctgagaggttcaggtagattactcgtctgtagcagtttattccttgggtctgtaatgaa |
43059984 |
T |
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| Q |
332 |
cggtgcagctgttttcctctgttttgtatcaatatggatttttgtttcctgaaaatattgagatgttctttagannnnnnnattttattgcagaggtgtt |
431 |
Q |
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| T |
43059985 |
cggtgcagctgttttcctctgttttgtatcaatatggatttttgtttcctgacaatattgagatgttctttagattttttt-ttttattgcagaggtgtt |
43060083 |
T |
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| Q |
432 |
tttgttgagcaggctggaagtaatgtggcattatttttgcatcttttacaagttttaggatttttgtttaatttgttgcaaatgcatccttattgtgaag |
531 |
Q |
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| T |
43060084 |
tttgttgagcaggctggaagtaatgtggcattatttttgcatcttttacaagttttaggatttttgtttaatttgttgcaaatgcatccttattgtgcag |
43060183 |
T |
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| Q |
532 |
tgtgctctttttgtttat----gatatttcttctgctgacaatgtgattaatttattggcgtttggcaagctcaaattcatgtgtgatgt |
617 |
Q |
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| T |
43060184 |
tgtgctctttttgtttatataagatatttcttctgctgacaatgtgattaatttattggcgtttggcaagctcaaattaatttgtgatgt |
43060273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 30433294 - 30433205
Alignment:
| Q |
66 |
tggtttaaagctgaacaaaagatgtttttattttaagattgtctgcatttttcacaaaattggtctattaaatttgcgaattcaaaatact |
156 |
Q |
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| T |
30433294 |
tggtttaaagctgaacaaaaactgtttttgttt-aagattgtatgcattttcgacaaaagttgtctattgaatttgctgattcaaaatact |
30433205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 26850371 - 26850462
Alignment:
| Q |
51 |
ggggttgattgattatggtttaaagctgaacaaaagatgttttta-ttttaagattgtctgcatttttcacaaaattggtctattaaatttg |
141 |
Q |
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| T |
26850371 |
ggggttgagtgattatggtttaatgctgaacaaaaattgttattatttttaagattgtaagcattttctgcaaaagttgtctattaaatttg |
26850462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 1531523 - 1531655
Alignment:
| Q |
51 |
ggggttgattgattatggtttaaagctgaacaaaagatgttttta-ttttaagattgtctgcatttttcacaaaattggtctattaaatttgcgaattca |
149 |
Q |
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| T |
1531523 |
ggggttgagtgattatggtttaatgcggaacaaaaattgtttttattttttagattgtatgcattttctgcaaaagttgtctattgaatttgaagattcc |
1531622 |
T |
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| Q |
150 |
aaatactaattatgtgctgtattattttctttagca |
185 |
Q |
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| T |
1531623 |
aaatac---ttatgttctgcactattttctttagca |
1531655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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