View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_73 (Length: 348)
Name: NF0743_low_73
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_73 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 80 - 348
Target Start/End: Complemental strand, 21941181 - 21940913
Alignment:
| Q |
80 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
179 |
Q |
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| T |
21941181 |
gagatattgttgaaagacacgttgagaagttgtaaacttgatgaactaccaaacttttcagggatgaagccattgaacttattgttagataaatctacaa |
21941082 |
T |
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| Q |
180 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
279 |
Q |
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| T |
21941081 |
tttcaagaatagggatacttgcaagctcctcaggtatttggcctgtcaaattattgtcagataattcgattgtcacaagagcttgacatttcgaaacact |
21940982 |
T |
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| Q |
280 |
ttttgggattgttccatacaagttgtttctacctagatcaattgttgaaattgatttgaaagactcaaa |
348 |
Q |
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| T |
21940981 |
ttttgggattgttccagacaagttgtttctaccaagatcaactgttgaaattgatttgcaggactcaaa |
21940913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 80 - 348
Target Start/End: Original strand, 10801135 - 10801403
Alignment:
| Q |
80 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
179 |
Q |
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| T |
10801135 |
gagatattgttgaaagacacgttgagaagttttaaacttgatgaacttccaaacttttcaggtatgaggccattgaaattattattagataaatctacaa |
10801234 |
T |
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| Q |
180 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
279 |
Q |
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| T |
10801235 |
tttcaagaatagggatatatgcaagctcctcaggtatttgacctgtcaaattattgtcagataattcgattatcataagagcttgacatttcgaaacact |
10801334 |
T |
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| Q |
280 |
ttttgggattgttccatacaagttgtttctacctagatcaattgttgaaattgatttgaaagactcaaa |
348 |
Q |
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| T |
10801335 |
ttttggtattgttccagataagttgtttctaccaagacgaattgttgaaattgatttgcatgactcaaa |
10801403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 10800991 - 10801135
Alignment:
| Q |
80 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
179 |
Q |
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| T |
10800991 |
gagatattgttgaaagacacattgagaagttataaacttgatgaactaccaaacttttcaggtatgaggccattgagattattgttagataaatctacac |
10801090 |
T |
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| Q |
180 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctg |
224 |
Q |
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| T |
10801091 |
tttcaagaatagggatatctgccagctcctcgggtattgaacctg |
10801135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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