View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_80 (Length: 330)

Name: NF0743_low_80
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_80
NF0743_low_80
[»] scaffold0025 (1 HSPs)
scaffold0025 (117-243)||(14977-15103)
[»] chr6 (18 HSPs)
chr6 (117-243)||(29614738-29614864)
chr6 (114-243)||(12167702-12167832)
chr6 (114-243)||(19286611-19286741)
chr6 (114-243)||(19883571-19883701)
chr6 (116-243)||(19877795-19877923)
chr6 (116-243)||(21365067-21365194)
chr6 (116-243)||(23969049-23969176)
chr6 (114-243)||(19786455-19786585)
chr6 (114-243)||(34640575-34640705)
chr6 (114-243)||(34647249-34647379)
chr6 (114-243)||(25470290-25470420)
chr6 (173-243)||(18799850-18799920)
chr6 (133-243)||(20008493-20008603)
chr6 (173-243)||(21565765-21565835)
chr6 (144-243)||(19471891-19471990)
chr6 (173-243)||(25396584-25396654)
chr6 (114-167)||(24513370-24513423)
chr6 (180-224)||(24513425-24513469)
[»] chr3 (11 HSPs)
chr3 (117-243)||(24192292-24192418)
chr3 (117-243)||(41455687-41455816)
chr3 (111-227)||(17241085-17241201)
chr3 (173-243)||(16802041-16802111)
chr3 (173-243)||(55499700-55499770)
chr3 (150-243)||(14865244-14865338)
chr3 (111-243)||(18914514-18914646)
chr3 (115-184)||(10390034-10390104)
chr3 (115-184)||(10415123-10415193)
chr3 (115-184)||(10421793-10421863)
chr3 (175-244)||(13324376-13324445)
[»] chr2 (12 HSPs)
chr2 (117-243)||(26583187-26583313)
chr2 (114-243)||(5706610-5706740)
chr2 (111-243)||(23878349-23878481)
chr2 (133-241)||(9978-10086)
chr2 (111-243)||(23063084-23063216)
chr2 (164-243)||(29281396-29281475)
chr2 (173-243)||(23089608-23089678)
chr2 (133-243)||(25181446-25181556)
chr2 (173-243)||(21907778-21907848)
chr2 (173-243)||(23102036-23102106)
chr2 (111-167)||(23264557-23264613)
chr2 (188-241)||(24660979-24661032)
[»] scaffold0026 (1 HSPs)
scaffold0026 (114-224)||(12437-12547)
[»] scaffold1773 (1 HSPs)
scaffold1773 (117-243)||(518-644)
[»] chr7 (20 HSPs)
chr7 (114-243)||(13006771-13006901)
chr7 (117-243)||(13743047-13743174)
chr7 (117-243)||(13123506-13123632)
chr7 (114-243)||(12591230-12591360)
chr7 (117-243)||(12710435-12710561)
chr7 (116-243)||(3857953-3858081)
chr7 (133-243)||(2464764-2464874)
chr7 (111-243)||(16676724-16676845)
chr7 (111-243)||(17650960-17651081)
chr7 (133-243)||(20311597-20311707)
chr7 (111-243)||(13678863-13678995)
chr7 (133-241)||(29181654-29181762)
chr7 (139-243)||(46625360-46625464)
chr7 (173-243)||(11389922-11389992)
chr7 (133-243)||(16090485-16090595)
chr7 (179-243)||(11383440-11383504)
chr7 (149-243)||(14320192-14320287)
chr7 (173-243)||(21231571-21231641)
chr7 (137-184)||(13678982-13679030)
chr7 (123-167)||(21231532-21231576)
[»] chr5 (14 HSPs)
chr5 (114-243)||(23527969-23528099)
chr5 (116-243)||(28889925-28890052)
chr5 (116-243)||(28896629-28896756)
chr5 (116-243)||(28909877-28910004)
chr5 (116-243)||(28931569-28931696)
chr5 (116-243)||(28946272-28946399)
chr5 (137-243)||(18408491-18408597)
chr5 (133-243)||(19236300-19236410)
chr5 (133-242)||(22467181-22467290)
chr5 (133-243)||(22460556-22460666)
chr5 (116-243)||(28933070-28933199)
chr5 (114-184)||(20819618-20819689)
chr5 (114-184)||(20826718-20826789)
chr5 (173-221)||(22439322-22439370)
[»] chr1 (8 HSPs)
chr1 (116-243)||(41111279-41111407)
chr1 (133-243)||(20858305-20858415)
chr1 (133-243)||(21705675-21705785)
chr1 (133-243)||(21710218-21710328)
chr1 (133-243)||(20851678-20851788)
chr1 (174-243)||(18712149-18712218)
chr1 (139-243)||(22030298-22030403)
chr1 (148-246)||(19961586-19961684)
[»] scaffold0117 (1 HSPs)
scaffold0117 (117-243)||(9167-9293)
[»] chr8 (6 HSPs)
chr8 (117-243)||(23865952-23866078)
chr8 (114-224)||(17053949-17054060)
chr8 (133-243)||(24321216-24321326)
chr8 (111-243)||(14057148-14057269)
chr8 (111-243)||(25111387-25111508)
chr8 (173-243)||(18613621-18613691)
[»] chr4 (10 HSPs)
chr4 (114-243)||(53483041-53483171)
chr4 (114-243)||(8046420-8046549)
chr4 (111-243)||(15407487-15407608)
chr4 (133-243)||(16147376-16147486)
chr4 (133-244)||(11847503-11847614)
chr4 (139-243)||(13887185-13887289)
chr4 (139-243)||(13888042-13888146)
chr4 (139-239)||(15244619-15244719)
chr4 (143-243)||(15307520-15307620)
chr4 (173-243)||(14486070-14486140)
[»] scaffold0247 (1 HSPs)
scaffold0247 (114-243)||(10711-10829)
[»] scaffold0029 (3 HSPs)
scaffold0029 (117-224)||(111271-111378)
scaffold0029 (133-243)||(91747-91857)
scaffold0029 (133-243)||(97473-97583)
[»] scaffold0456 (2 HSPs)
scaffold0456 (114-224)||(394-504)
scaffold0456 (114-224)||(7539-7649)
[»] scaffold0924 (1 HSPs)
scaffold0924 (117-216)||(1343-1442)
[»] scaffold0222 (1 HSPs)
scaffold0222 (111-243)||(16171-16303)
[»] scaffold0317 (2 HSPs)
scaffold0317 (111-243)||(756-888)
scaffold0317 (137-184)||(875-923)
[»] scaffold0085 (1 HSPs)
scaffold0085 (133-243)||(4217-4327)
[»] scaffold0310 (1 HSPs)
scaffold0310 (176-243)||(6909-6976)
[»] scaffold0461 (2 HSPs)
scaffold0461 (111-243)||(581-702)
scaffold0461 (210-243)||(7605-7638)
[»] scaffold0053 (2 HSPs)
scaffold0053 (133-243)||(80036-80146)
scaffold0053 (138-243)||(81764-81869)
[»] scaffold0476 (1 HSPs)
scaffold0476 (150-243)||(3854-3947)
[»] scaffold0023 (1 HSPs)
scaffold0023 (133-226)||(134867-134960)
[»] scaffold0124 (1 HSPs)
scaffold0124 (111-243)||(34861-34982)
[»] scaffold0634 (2 HSPs)
scaffold0634 (180-243)||(3073-3136)
scaffold0634 (149-185)||(3181-3217)
[»] scaffold0077 (1 HSPs)
scaffold0077 (173-243)||(4195-4265)
[»] scaffold0138 (1 HSPs)
scaffold0138 (139-243)||(1218-1322)
[»] scaffold0028 (2 HSPs)
scaffold0028 (139-243)||(1468-1572)
scaffold0028 (173-242)||(65506-65575)
[»] scaffold0090 (1 HSPs)
scaffold0090 (149-243)||(17567-17661)
[»] scaffold0020 (1 HSPs)
scaffold0020 (173-243)||(102503-102573)
[»] scaffold0006 (1 HSPs)
scaffold0006 (117-167)||(49595-49645)
[»] scaffold0004 (2 HSPs)
scaffold0004 (173-243)||(129221-129291)
scaffold0004 (111-243)||(116266-116388)
[»] scaffold0235 (2 HSPs)
scaffold0235 (124-243)||(23192-23300)
scaffold0235 (124-167)||(15475-15518)
[»] scaffold0232 (1 HSPs)
scaffold0232 (139-243)||(18961-19065)
[»] scaffold0139 (1 HSPs)
scaffold0139 (110-167)||(15521-15578)
[»] scaffold0031 (2 HSPs)
scaffold0031 (139-243)||(121301-121406)
scaffold0031 (139-243)||(132178-132283)
[»] scaffold0107 (1 HSPs)
scaffold0107 (180-243)||(41171-41234)
[»] scaffold0154 (1 HSPs)
scaffold0154 (173-243)||(30300-30370)
[»] scaffold0483 (1 HSPs)
scaffold0483 (148-244)||(11569-11665)
[»] scaffold0261 (1 HSPs)
scaffold0261 (149-185)||(24070-24106)
[»] scaffold0094 (1 HSPs)
scaffold0094 (139-243)||(51645-51749)


Alignment Details
Target: scaffold0025 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 14977 - 15103
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     ||||||||||||||||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcga 15103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 29614738 - 29614864
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     ||||||||||||||||||||||||||    
T  29614838 taagcgaactagccgtcgcttaagcga 29614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 12167832 - 12167702
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcga 12167702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 19286741 - 19286611
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcga 19286611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 19883701 - 19883571
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcga 19883571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 19877923 - 19877795
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtcg 214  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 19877824  T
Q  215 ctcaagcgaactagccgtcgcttaagcga 243  Q
    || ||||||||||||||||||||||||||    
T  19877823 cttaagcgaactagccgtcgcttaagcga 19877795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 21365067 - 21365194
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | |||||| |||||||||||||||||||    
T  21365167 ttaagcgagctagccgtcgcttaagcga 21365194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 23969049 - 23969176
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | |||||| |||||||||||||||||||    
T  23969149 ttaagcgagctagccgtcgcttaagcga 23969176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 19786455 - 19786585
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | ||||||||||  |||||||| ||| |||||||||| |||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaagtgaacccagaacctactgtaagctggt 19786554  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  19786555 cgcttaagcgaactagccgtcgcttaagcga 19786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 34640575 - 34640705
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcga 34640705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 34647249 - 34647379
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcga 34647379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 25470290 - 25470420
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| | |||||||||| |||| |||| ||| |||||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||| ||||||||||||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcga 25470420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 18799920 - 18799850
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18799920 aaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcga 18799850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 20008493 - 20008603
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20008493 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20008592  T
Q  233 cgcttaagcga 243  Q
     ||||||||||    
T  20008593 tgcttaagcga 20008603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 21565765 - 21565835
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  21565765 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcga 21565835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 19471891 - 19471990
Alignment:
Q  144 cagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||| ||||||||||  ||| | |||| ||||||| |||||| ||||| |||| ||||||||||| |||||| | |||| ||||||||||||    
T  19471891 cagaagttcgcttaagcgaaccgcaagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcga 19471990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 25396654 - 25396584
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||  ||||||| |||||||| |||||| | |||||||||||||||||    
T  25396654 aaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcga 25396584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 24513370 - 24513423
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    ||||| ||||||||| |||||| |||||  ||||||||||||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgt 24513423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 24513425 - 24513469
Alignment:
Q  180 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaa 224  Q
    ||||||| |||||||||||| |||| ||||||||||| |||||||    
T  24513425 agcgagcggaacccaaactttctgtgagccggtcgcttaagcgaa 24513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 24192418 - 24192292
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     ||||||||||||||||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcga 24192292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 41455687 - 41455816
Alignment:
Q  117 gtgagcgaaaaacca--ttttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtc 213  Q
    |||||||||||||||  |||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| ||||    
T  41455687 gtgagcgaaaaaccaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtc 41455786  T
Q  214 gctcaagcgaactagccgtcgcttaagcga 243  Q
    ||| ||||||||||||||||||||||||||    
T  41455787 gcttaagcgaactagccgtcgcttaagcga 41455816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 17241085 - 17241201
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||||| ||||  || |||| ||    
T  17241085 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgcaagcgaaccgtcagcgagcggaaccccaactctctataagtcg 17241184  T
Q  211 gtcgctcaagcgaacta 227  Q
    |||||| ||||||||||    
T  17241185 gtcgcttaagcgaacta 17241201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 16802041 - 16802111
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  16802041 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcga 16802111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 55499700 - 55499770
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  55499700 aaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagacgtcgcttaagcga 55499770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 14865338 - 14865244
Alignment:
Q  150 ttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccg-tcgcttaagcga 243  Q
    |||||| |||||| |||||||| | |||||||||| ||||||||| || |||| ||||| ||||||| |||||||||||||| ||||||||||||    
T  14865338 ttcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcga 14865244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 18914646 - 18914514
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| || ||  |||||| |||||||||||| ||| ||||||  ||| |||| | ||||||| |||||| ||||  || |||||||    
T  18914646 gaacccgtaagcgaaaaatcaattccattctgccagaagttcgcttaagtgaaccgcaagcgaacctttagcgagcggaaccccaactctctataagccg 18914547  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||  ||| ||||||||||||    
T  18914546 gtcgcttaagcgaacctgccatcgcttaagcga 18914514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 10390034 - 10390104
Alignment:
Q  115 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 184  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10390104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 10415123 - 10415193
Alignment:
Q  115 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 184  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10415193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 10421793 - 10421863
Alignment:
Q  115 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 184  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10421863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 13324376 - 13324445
Alignment:
Q  175 ccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgag 244  Q
    |||| |||||||  ||||||||||| ||| ||||| |||||| |||||| | |||| |||||||||||||    
T  13324376 ccgtcagcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgag 13324445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 26583313 - 26583187
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     ||||||||||||||||||||||||||    
T  26583213 taagcgaactagccgtcgcttaagcga 26583187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 5706610 - 5706740
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcga 5706740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 23878481 - 23878349
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||||||||||||  |||| ||||||||||| ||  | ||||||||||||||| |  ||| |||||||||||||| ||||||| |||||||||||||||    
T  23878481 gaacctgtgagcgaggaacctttttgattctgccaagaattcgctcaagcgaactgcaagcgaaccgtaagcgagcagaacccagacttactgtaagccg 23878382  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||||||||||||||||||    
T  23878381 gtcgcttaagcgaactagccgtcgcttaagcga 23878349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 10086 - 9978
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  10086 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 9987  T
Q  233 cgcttaagc 241  Q
    |||||||||    
T  9986 cgcttaagc 9978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 23063216 - 23063084
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| |  ||| ||||||   ||||| ||||  ||||||||||    
T  23063216 gaacccgtaagcgaaaaatcatttgcattctgtcagaagttcgcttaagcgaaccgcaagcgaggcgttagcgagtgaaaccccaactctctgtaagccg 23063117  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||||| |||||||||||||||||    
T  23063116 gtcgcttaagcgaaccagccgtcgcttaagcga 23063084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 29281475 - 29281396
Alignment:
Q  164 ccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29281475 ccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcga 29281396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 23089608 - 23089678
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  23089608 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcga 23089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 25181446 - 25181556
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | ||||||| || ||||||||| || |||||||||| ||||||| |||| ||||||||||    
T  25181446 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagtgaactgaacccagacctactgtaagctggtcgcttaagcaaactagccgt 25181545  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  25181546 cgcttaagcga 25181556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 21907848 - 21907778
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  21907848 aaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcga 21907778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 23102036 - 23102106
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||||||||| || || ||||||||| | ||||||||||||||    
T  23102036 aaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggacgtcgcttaagcga 23102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 23264613 - 23264557
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    ||||| || ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgt 23264557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 24661032 - 24660979
Alignment:
Q  188 gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagc 241  Q
    |||||| ||||| |||| ||||||||||| |||||| | |||||||||||||||    
T  24661032 gaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagc 24660979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 12437 - 12547
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  214 gctcaagcgaa 224  Q
    ||| |||||||    
T  12537 gcttaagcgaa 12547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 644 - 518
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||| | |||||||||| ||||||||| || |||||||||| |||||||    
T  644 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 545  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     ||||||||||||||||||||||||||    
T  544 taagcgaactagccgtcgcttaagcga 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 13006901 - 13006771
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcga 13006771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 13743174 - 13743047
Alignment:
Q  117 gtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||| | |||||||||||||||||||| || |||| ||||||||||||    
T  13743174 gtgagcgaaaaacaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactataagccggtcgc 13743075  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||||||||||||||||||||||    
T  13743074 ttaagcgaactagccgtcgcttaagcga 13743047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 13123506 - 13123632
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     |||||| |||||||||||||||||||    
T  13123606 taagcgagctagccgtcgcttaagcga 13123632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 12591230 - 12591360
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcga 12591360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 12710435 - 12710561
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | | |||||||| ||||||||| || |||||||||  |||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacctgtaagcgaactgaacccagacctactgtaagttggtcgct 12710534  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     |||||| |||||||||||||||||||    
T  12710535 taagcgagctagccgtcgcttaagcga 12710561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 3857953 - 3858081
Alignment:
Q  116 tgtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcg 214  Q
    |||||||||||||||||||| ||||||||   ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcg 3858052  T
Q  215 ctcaagcgaactagccgtcgcttaagcga 243  Q
    || |||||| |||||||||||||||||||    
T  3858053 cttaagcgagctagccgtcgcttaagcga 3858081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 2464874 - 2464764
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  2464874 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 2464775  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  2464774 cgcttaagcga 2464764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 16676845 - 16676724
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| ||||||| |||||||||||||||    
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 16676757  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||| ||||||||||||||    
T  16676756 gtcgcttaagcgaactagtcgtcgcttaagcga 16676724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 17651081 - 17650960
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| ||||||| |||||||||||||||    
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 17650993  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||| ||||||||||||||    
T  17650992 gtcgcttaagcgaactagtcgtcgcttaagcga 17650960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 20311597 - 20311707
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| ||||||||||  ||| |||||||||||||| ||||||| |||||||| |||||||||||| |||||| ||||||||    
T  20311597 tttgattctgccaagaattcgcttaagcgaaccgcaagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgt 20311696  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  20311697 cgcttaagcga 20311707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 13678995 - 13678863
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| || ||| ||||||   ||||| ||||  ||||||||||    
T  13678995 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 13678896  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||||| |||||||||||||||||    
T  13678895 gtcgcttaagcgaaccagccgtcgcttaagcga 13678863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 29181654 - 29181762
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  |||||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  29181654 tttgattctgccaagagttcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 29181753  T
Q  233 cgcttaagc 241  Q
    |||||||||    
T  29181754 cgcttaagc 29181762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 46625464 - 46625360
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    |||| |||||||||||| |||||||||| ||||||||| | ||||||| |||| | ||||  |||||||| ||||||| |||||| | ||||||||||||    
T  46625464 tctgccagaagttcgcttaagcgaaccgcgagcaaaccattagcgagcagaacgccaactctctgtaagcaggtcgcttaagcgagccagccgtcgctta 46625365  T
Q  239 agcga 243  Q
    |||||    
T  46625364 agcga 46625360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 11389922 - 11389992
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||||||||| ||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||    
T  11389922 aaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcga 11389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 16090595 - 16090485
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||| | |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  16090595 tttgattctgccaagaattcgcttaagcaagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16090496  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  16090495 cgcttaagcga 16090485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 11383440 - 11383504
Alignment:
Q  179 aagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||| ||||||| ||||||||| |||| |||||| |||||| |||||||||||||||||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcga 11383504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 14320192 - 14320287
Alignment:
Q  149 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagc-tgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||||||||||||||||||| ||| || |||||||  | |||  ||||| |||| ||||||||||| |||||| ||| || ||||||||||||    
T  14320192 gttcgctcaagcgaaccgtgagcgaactgtgagcgagcgaggacctcaactttctgtgagccggtcgcttaagcgagctacccttcgcttaagcga 14320287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 21231571 - 21231641
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||| |||| ||| ||||||| |||| |||| | ||||||||||||||    
T  21231571 aaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcga 21231641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 13679030 - 13678982
Alignment:
Q  137 attctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcga 184  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  13679030 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 13678982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 21231532 - 21231576
Alignment:
Q  123 gaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    |||||| |||||| |||||  ||||||||||||||||||||||||    
T  21231532 gaaaaatcattttcattctaccagaagttcgctcaagcgaaccgt 21231576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 23528099 - 23527969
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||||||||||||||||||||    
T  23527999 cgcttaagcgaactagccgtcgcttaagcga 23527969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28889925 - 28890052
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28889925 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28890024  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||  ||||||||||||||||||    
T  28890025 ttaagcgagatagccgtcgcttaagcga 28890052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28896629 - 28896756
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28896629 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28896728  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||  ||||||||||||||||||    
T  28896729 ttaagcgagatagccgtcgcttaagcga 28896756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28909877 - 28910004
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28909877 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28909976  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||  ||||||||||||||||||    
T  28909977 ttaagcgagatagccgtcgcttaagcga 28910004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28931569 - 28931696
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28931569 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28931668  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||  ||||||||||||||||||    
T  28931669 ttaagcgagatagccgtcgcttaagcga 28931696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28946272 - 28946399
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 215  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28946272 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28946371  T
Q  216 tcaagcgaactagccgtcgcttaagcga 243  Q
    | ||||||  ||||||||||||||||||    
T  28946372 ttaagcgagatagccgtcgcttaagcga 28946399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 18408491 - 18408597
Alignment:
Q  137 attctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgct 236  Q
    |||||| |||||||||||| ||||||  ||  ||| |||||| ||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||||||    
T  18408491 attctgccagaagttcgcttaagcgagtcgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgct 18408590  T
Q  237 taagcga 243  Q
    |||||||    
T  18408591 taagcga 18408597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 19236410 - 19236300
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  19236410 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 19236311  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  19236310 cgcttaagcga 19236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 22467290 - 22467181
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||| | |||||||||||||||    
T  22467290 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgt 22467191  T
Q  233 cgcttaagcg 242  Q
    ||||||||||    
T  22467190 cgcttaagcg 22467181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 22460666 - 22460556
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||  | || |||||||  |||||||| || |||||||||| ||||||| |||||||||||||||    
T  22460666 tttgattctgccaagaattcgcttaagcgagccgtgagtgacccataagcgaattgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 22460567  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  22460566 cgcttaagcga 22460556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28933070 - 28933199
Alignment:
Q  116 tgtgagcgaaaaacca-ttttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaa-cccaaacttactgtaagccggtc 213  Q
    |||||||||||||||| ||||| |||||||  ||||||||  |||||| |||||||| | |||||||||| ||||| |||| || |||||||||  ||||    
T  28933070 tgtgagcgaaaaaccatttttgtttctgtccaaagttcgccaaagcgagccgtgagcgacccgtaagcgaactgaaccccagacctactgtaagttggtc 28933169  T
Q  214 gctcaagcgaactagccgtcgcttaagcga 243  Q
    | | ||||||  ||||||| ||||||||||    
T  28933170 gtttaagcgagatagccgtggcttaagcga 28933199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 20819689 - 20819618
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 184  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20819618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 20826789 - 20826718
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 184  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 22439322 - 22439370
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagc 221  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| ||||    
T  22439322 aaccttaagcgagcagaacccagacttactgtaagccggtcgcttaagc 22439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 41111407 - 41111279
Alignment:
Q  116 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtcg 214  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 41111308  T
Q  215 ctcaagcgaactagccgtcgcttaagcga 243  Q
    || ||||||||||||||||||||||||||    
T  41111307 cttaagcgaactagccgtcgcttaagcga 41111279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 20858305 - 20858415
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20858305 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20858404  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  20858405 cgcttaagcga 20858415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 21705785 - 21705675
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  21705785 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21705686  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  21705685 cgcttaagcga 21705675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 21710328 - 21710218
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| |||| ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  21710328 tttgattctgccaagaattcgcttaagcgagccgtgagcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21710229  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  21710228 cgcttaagcga 21710218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 20851678 - 20851788
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20851678 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20851777  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  20851778 cgcttaagcga 20851788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 18712218 - 18712149
Alignment:
Q  174 accgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||| ||||||| |||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  18712218 accgttagcgagcggaaccccaactttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcga 18712149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 22030298 - 22030403
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 237  Q
    |||| ||||||||||||  |||||||||||||| ||||| | ||||||| |||| | ||||  ||||||||| |||||| |||||| | |||| ||||||    
T  22030298 tctgccagaagttcgcttgagcgaaccgtgagcgaaacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgctt 22030397  T
Q  238 aagcga 243  Q
    ||||||    
T  22030398 aagcga 22030403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 19961684 - 19961586
Alignment:
Q  148 agttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgagat 246  Q
    ||||||||| |||||||||  ||| |||||| |||||||  ||| |||||||| ||||| || ||||||| |||||| ||| || |||||||||||||||    
T  19961684 agttcgctcgagcgaaccgcaagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagat 19961586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 9167 - 9293
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | || ||||||| ||||||||| || |||||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     |||||| |||||||||||||||||||    
T  9267 taagcgagctagccgtcgcttaagcga 9293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 23866078 - 23865952
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 23865979  T
Q  217 caagcgaactagccgtcgcttaagcga 243  Q
     |||||| |||||||||||||||||||    
T  23865978 taagcgagctagccgtcgcttaagcga 23865952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 17054060 - 17053949
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 17053961  T
Q  213 cgctcaagcgaa 224  Q
    |||| |||||||    
T  17053960 cgcttaagcgaa 17053949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 24321216 - 24321326
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  24321216 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 24321315  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  24321316 cgcttaagcga 24321326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 14057148 - 14057269
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |||           |||| ||||||| |||| |||| |||||    
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagc-----------gagcggaacccagactttctgtgagccg 14057236  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||| |||||||||||||||||||    
T  14057237 gtcgcttaagcgagctagccgtcgcttaagcga 14057269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 25111508 - 25111387
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||           |||| ||||||| ||||||| |||| |||| || ||    
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaa-----------ccgtcagcgagcggaacccagactttctgtgagtcg 25111420  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||| ||||||||||||||||    
T  25111419 gtcgcttaagcgaactggccgtcgcttaagcga 25111387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 18613691 - 18613621
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||  |||||||| ||||||| |||||||| |||||||||||||||||    
T  18613691 aaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcga 18613621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 53483171 - 53483041
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 212  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  213 cgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||| ||||||||| ||||||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcga 53483041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 8046420 - 8046549
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 213  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||| ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  214 gctcaagcgaactagccgtcgcttaagcga 243  Q
    ||| |||||| |||| ||||||||||||||    
T  8046520 gcttaagcgagctagacgtcgcttaagcga 8046549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 15407608 - 15407487
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||           |||| ||||||| ||||| | |||| |||| |||||    
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaa-----------ccgtcagcgagcggaacctagactttctgtgagccg 15407520  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||| ||||||||||||||||    
T  15407519 gtcgcttaagcgaactggccgtcgcttaagcga 15407487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 16147376 - 16147486
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  16147376 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16147475  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  16147476 cgcttaagcga 16147486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 11847614 - 11847503
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccg 231  Q
    |||||||||| ||  | |||||| ||||||||||||||| | ||||||||||||| ||| |||||||| ||||| |  ||||||| |||||||||| |||    
T  11847614 tttgattctgccaagaattcgcttaagcgaaccgtgagcgacccgtaagcgagctagaatccaaacttcctgta-gttggtcgcttaagcgaactacccg 11847516  T
Q  232 tcgcttaagcgag 244  Q
    |||||||||||||    
T  11847515 tcgcttaagcgag 11847503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 13887289 - 13887185
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    ||||||||||||| ||| |||||||||||| || |||| | ||||||| |||| | ||||  |||||||||||||| | |||||| | ||||||||||||    
T  13887289 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13887190  T
Q  239 agcga 243  Q
    |||||    
T  13887189 agcga 13887185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 13888146 - 13888042
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    ||||||||||||| ||| |||||||||||| || |||| | ||||||| |||| | ||||  |||||||||||||| | |||||| | ||||||||||||    
T  13888146 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13888047  T
Q  239 agcga 243  Q
    |||||    
T  13888046 agcga 13888042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 15244719 - 15244619
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    ||||||||||||||||| ||||||||||||||| | || | ||||||| |||| | ||||  |||||||||||||||| ||||||   | ||||||||||    
T  15244719 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagccggtcgcttaagcgagtcaaccgtcgctta 15244620  T
Q  239 a 239  Q
    |    
T  15244619 a 15244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 15307620 - 15307520
Alignment:
Q  143 tcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcg 242  Q
    ||||||||||||| ||||||||||||||| | || | ||||||| |||| | ||||  ||||||| |||||||| |||||| | |||| |||||||||||    
T  15307620 tcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagtcggtcgcttaagcgagccagccatcgcttaagcg 15307521  T
Q  243 a 243  Q
    |    
T  15307520 a 15307520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 14486140 - 14486070
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||||||||  |||||||||||||||| |||||| | |||| ||||||||||||    
T  14486140 aaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcga 14486070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 10829 - 10711
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           |||| ||||||||| ||||||| ||||||||||||||||||    
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcg-----------aaccctaagcgagcagaacccagacttactgtaagccggtc 10741  T
Q  214 gctcaagcgaactagccgtcgcttaagcga 243  Q
    ||| |||||| |||||||||||||||||||    
T  10740 gcttaagcgagctagccgtcgcttaagcga 10711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 111378 - 111271
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccatacctactgtaagttggtcgct 111279  T
Q  217 caagcgaa 224  Q
     |||||||    
T  111278 taagcgaa 111271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 91747 - 91857
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  91747 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 91846  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  91847 cgcttaagcga 91857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 97473 - 97583
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  97473 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 97572  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  97573 cgcttaagcga 97583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 504 - 394
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | | |||| ||||||||| ||||||| |||| ||||||||| |||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 405  T
Q  214 gctcaagcgaa 224  Q
    ||| |||||||    
T  404 gcttaagcgaa 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 7649 - 7539
Alignment:
Q  114 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | | |||| ||||||||| ||||||| |||| ||||||||| |||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 7550  T
Q  214 gctcaagcgaa 224  Q
    ||| |||||||    
T  7549 gcttaagcgaa 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 1343 - 1442
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 216  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||| |||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 16303 - 16171
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| || ||| ||| ||||||||||||||| || |||||||  ||| |||||| ||||||| |||||| ||||| ||||||||||    
T  16303 gaacccgtaagcgaaaaatcaatttcattatgtcagaagttcgcttaaccgaaccgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccg 16204  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||| ||| |||||||||||||||    
T  16203 gtcgcttaagcgagctaaccgtcgcttaagcga 16171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 888 - 756
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| || ||| ||||||   ||||| ||||  ||||||||||    
T  888 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 789  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||||| |||||||||||||||||    
T  788 gtcgcttaagcgaaccagccgtcgcttaagcga 756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 923 - 875
Alignment:
Q  137 attctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcga 184  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  923 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 4217 - 4327
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||| |    
T  4217 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccat 4316  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  4317 cgcttaagcga 4327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 6976 - 6909
Alignment:
Q  176 cgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  6976 cgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgcttaagcga 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 581 - 702
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||| |||           ||||  ||||| ||||| ||||||||||    
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagc-----------gagcgaaaccccaactttctgtaagccg 669  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||||||||||||||||||    
T  670 gtcgcttaagcgaactagccgtcgcttaagcga 702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 7605 - 7638
Alignment:
Q  210 ggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||| ||||||||||||||||||||||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcga 7638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 80036 - 80146
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 232  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  80036 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 80135  T
Q  233 cgcttaagcga 243  Q
    |||||||||||    
T  80136 cgcttaagcga 80146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 81764 - 81869
Alignment:
Q  138 ttctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 237  Q
    ||||| |||||||||||| ||||||||||| ||| ||| || |||||||  ||||  ||||  ||||||| |||||||| |||||| | |||||||||||    
T  81764 ttctgccagaagttcgcttaagcgaaccgtaagcgaactgttagcgagcgaaacctcaactctctgtaagtcggtcgcttaagcgagccagccgtcgctt 81863  T
Q  238 aagcga 243  Q
    ||||||    
T  81864 aagcga 81869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 3854 - 3947
Alignment:
Q  150 ttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||  ||| ||||||||  |||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  3854 ttcgcttaagcgaaccgcaagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcga 3947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 134960 - 134867
Alignment:
Q  133 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaact 226  Q
    |||||||||||||  | |||||| ||||||||||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||    
T  134960 tttgattctgtcaagaattcgcttaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 34861 - 34982
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 210  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||| |||           |||| |||||  ||||| ||||||||||    
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagc-----------gagcggaacctcaactttctgtaagccg 34949  T
Q  211 gtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||||||||| ||||||||||||    
T  34950 gtcgcttaagcgaactagccatcgcttaagcga 34982  T

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Target: scaffold0634 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 3136 - 3073
Alignment:
Q  180 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||  |||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  3136 agcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcga 3073  T

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Target: scaffold0634; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 3217 - 3181
Alignment:
Q  149 gttcgctcaagcgaaccgtgagcaaaccgtaagcgag 185  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  3217 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 3181  T

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Target: scaffold0077 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 4195 - 4265
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||||| ||||| ||||||| ||||||||||||| | ||||| ||||||||||| ||||||||||||||    
T  4195 aaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagacgtcgcttaagcga 4265  T

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Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 1322 - 1218
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    ||||||||||||||||| |||||||||||||   | || | ||||||| ||| || ||||  |||| ||||||||||| |||||| | ||||||||||||    
T  1322 tctgtcagaagttcgcttaagcgaaccgtgattgagccattagcgagcggaaacccaactctctgtgagccggtcgcttaagcgagccagccgtcgctta 1223  T
Q  239 agcga 243  Q
    |||||    
T  1222 agcga 1218  T

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Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 1572 - 1468
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    |||||||||||||| || ||||||||||||||| | ||   ||||||| |||||| ||||  |||| ||||||||||| |||||| | |||| |||||||    
T  1572 tctgtcagaagttcacttaagcgaaccgtgagcgagccagtagcgagcggaaccccaactctctgtcagccggtcgcttaagcgagccagccttcgctta 1473  T
Q  239 agcga 243  Q
    |||||    
T  1472 agcga 1468  T

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Target: scaffold0028; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 65575 - 65506
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcg 242  Q
    |||||| ||||||| |||||| ||||  |||||||||||||||| |||||||| ||||||| ||||||||    
T  65575 aaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcg 65506  T

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Target: scaffold0090 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 17661 - 17567
Alignment:
Q  149 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||||||| || |||  ||| ||| || |||||||  ||||||||||| |||||||||||||||| |||||| | |||| ||||||||||||    
T  17661 gttcgctcaagagacccgcaagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcga 17567  T

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Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 102503 - 102573
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||| ||||||| |||||||| |||||||| |||| ||||||||||||    
T  102503 aaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcga 102573  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 49645 - 49595
Alignment:
Q  117 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgt 49595  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 129221 - 129291
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| ||||||| |||||| ||||| |||| ||||||||||| |||||| | |||||||||||||||||    
T  129221 aaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcga 129291  T

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Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 116388 - 116266
Alignment:
Q  111 gaacctgtgagcgaaaaaccattttg-attctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagcc 209  Q
    ||||| || ||||||||| ||||||  ||||||||||||||||||||||||||||||| |||           ||||  || || ||||  |||||||||    
T  116388 gaacccgtaagcgaaaaatcatttttcattctgtcagaagttcgctcaagcgaaccgttagc-----------gagcgaaatcccaactctctgtaagcc 116300  T
Q  210 ggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||| |||||||| |||||||||||||||||    
T  116299 ggtcgcttaagcgaaccagccgtcgcttaagcga 116266  T

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Target: scaffold0235 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 23192 - 23300
Alignment:
Q  124 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcga 223  Q
    |||||||||||| |||||| ||||||||||||||||||           |||||| |||||| ||||||| ||||| |||| ||||||| ||  ||||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcg-----------aaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcga 23280  T
Q  224 actagccgtcgcttaagcga 243  Q
     |||||||||||||||||||    
T  23281 gctagccgtcgcttaagcga 23300  T

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Target: scaffold0235; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 15475 - 15518
Alignment:
Q  124 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgt 15518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 18961 - 19065
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    ||||||||||||||||| ||||||||||||||| | || | ||||||| |||||| ||||  |||| |||| |||||| || ||| | ||||||| | ||    
T  18961 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaaccccaactgtctgtgagccagtcgcttaaccgagccagccgtctccta 19060  T
Q  239 agcga 243  Q
    |||||    
T  19061 agcga 19065  T

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Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 15521 - 15578
Alignment:
Q  110 agaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 167  Q
    |||||| || ||||||||| |||||  ||| |||||||||||||||||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgt 15578  T

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Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 121406 - 121301
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccg-taagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 237  Q
    |||| ||||||||||||  |||||||||||||| ||||  | ||||||| |||| | ||||  |||||||||||| ||| |||||| | |||| ||||||    
T  121406 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 121307  T
Q  238 aagcga 243  Q
    ||||||    
T  121306 aagcga 121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 132283 - 132178
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccg-taagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 237  Q
    |||| ||||||||||||  |||||||||||||| ||||  | ||||||| |||| | ||||  |||||||||||| ||| |||||| | |||| ||||||    
T  132283 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 132184  T
Q  238 aagcga 243  Q
    ||||||    
T  132183 aagcga 132178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 41171 - 41234
Alignment:
Q  180 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    ||||||| |||||| ||| | |||| ||||| ||||| ||||||||||| ||||||||||||||    
T  41171 agcgagcggaaccccaaccttctgtgagccgatcgcttaagcgaactagacgtcgcttaagcga 41234  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 30370 - 30300
Alignment:
Q  173 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 243  Q
    |||||| |||||||  |||| |||||| |||||||||||||||| |||||| | | || ||||||||||||    
T  30370 aaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcga 30300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 11569 - 11665
Alignment:
Q  148 agttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgag 244  Q
    ||||||||| |||||||||  ||| | |||| |||||||  ||| |||||||| ||||| || ||||||| |||||||||| || |||||||||||||    
T  11569 agttcgctcgagcgaaccgcaagcgatccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgaactacccttcgcttaagcgag 11665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 24070 - 24106
Alignment:
Q  149 gttcgctcaagcgaaccgtgagcaaaccgtaagcgag 185  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  24070 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 24106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 51749 - 51645
Alignment:
Q  139 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 238  Q
    |||| |||||||||||| |||||||||||  || |||||| |||||||  ||||  ||||  || | ||| |||| || |||||| | ||||||||||||    
T  51749 tctgccagaagttcgcttaagcgaaccgtatgcgaaccgttagcgagcgaaacctcaactctctatgagctggtcacttaagcgagccagccgtcgctta 51650  T
Q  239 agcga 243  Q
    |||||    
T  51649 agcga 51645  T

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