View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_82 (Length: 327)
Name: NF0743_low_82
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 84 - 319
Target Start/End: Original strand, 942259 - 942496
Alignment:
| Q |
84 |
tactattattgtactctggttctctaagatacattctttagtacaccttgtgttgtagtggtctgttttggtttgttaataatatatttgtgctcttttt |
183 |
Q |
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| T |
942259 |
tactattattgtactttggttctctgacagacattctttagtacaccttgtgttgctgtggtctgttttggtttgttaataatatatttgtgctcttttt |
942358 |
T |
|
| Q |
184 |
tcactcnnnnnnnnn-ta-atatttgtgatctttttggcctttnnnnnnngaatgtttaattgctttgatgatttattttttgaggggtgctttgatgaa |
281 |
Q |
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|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
942359 |
tcactcaaaaaaaatatatatatttgtgatctttttggcctttaaaaaaagaatgtttaattgctttgatgatttattttttgaggggtgctttaatgaa |
942458 |
T |
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| Q |
282 |
ttaattatataggtggtttatgccgttaaatattcttc |
319 |
Q |
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| T |
942459 |
ttaattatataggtggtttatgccgttaaatattcttc |
942496 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 48767521 - 48767473
Alignment:
| Q |
6 |
accatggcacttcttctcatagtagctccaaccaatttgccggcaacag |
54 |
Q |
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| T |
48767521 |
accaaggcacttcttctcatagtagctccaaccaatttgccggccacag |
48767473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 38037717 - 38037764
Alignment:
| Q |
117 |
ttctttagtacaccttgtgttgtagtggtctgttttggtttgttaata |
164 |
Q |
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|||||| ||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
38037717 |
ttctttcgtataccttgtgttgaagtggtatgttttggtttgttaata |
38037764 |
T |
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