View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_84 (Length: 320)
Name: NF0743_low_84
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 80 - 272
Target Start/End: Original strand, 47904802 - 47904996
Alignment:
| Q |
80 |
atgaaaactaagatggactgaaattgaataaagtctaaaaaatactagtaaattttgctagaaacaaaagatacataaatcatgaagnnnnnnnnnctag |
179 |
Q |
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| T |
47904802 |
atgaaaactaagatgaactgaaattgaataaagtctaaaaaaaactagtaaattttgctagaaacaaaagacacataaatcatgaagaaaaaaaaactag |
47904901 |
T |
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| Q |
180 |
aaagcaaaaaacagaatattatgacccagacaaacttata--tataacatagtttagttatcttcatgtaaaggtgtatatatatttgataatct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47904902 |
aaagcaaaaaacagaatattatgacccagacaaacttatatatataacatagtttagttatcttcatgtaaaggtgtatatatatttgataatct |
47904996 |
T |
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