View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_9 (Length: 602)
Name: NF0743_low_9
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 33 - 570
Target Start/End: Original strand, 7639441 - 7639980
Alignment:
| Q |
33 |
actagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagt |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7639441 |
actagtgtcttaagttttcagaggatactattcagcttcttccttcatttcaaaatttgacacttctgtttctgagggctaacactttcactagtgaagt |
7639540 |
T |
|
| Q |
133 |
agtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatg |
232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
7639541 |
agtaatggacattctcctaaagactcctaatctgaaagctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgtaccatg |
7639640 |
T |
|
| Q |
233 |
ttttgaggttaagaaatacta--atattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagac |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7639641 |
ttttgaggttaagaaatactataatattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatcttgaagac |
7639740 |
T |
|
| Q |
331 |
gactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttatta |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639741 |
gactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttatta |
7639840 |
T |
|
| Q |
431 |
attttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagc |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639841 |
attttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagc |
7639940 |
T |
|
| Q |
531 |
tgtatgccccgaaagctgtctcatgacatttcagtagaca |
570 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
7639941 |
tgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 33 - 570
Target Start/End: Original strand, 7632745 - 7633263
Alignment:
| Q |
33 |
actagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagt |
132 |
Q |
| |
|
|||||| |||| ||| |||| |||| ||| | |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
7632745 |
actagtatcttgagtattcaaaggagactctccatcatcttccttcatttcaaaatttgacacatctgcttctgaggactaacactttcactagtgaagt |
7632844 |
T |
|
| Q |
133 |
agtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatg |
232 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| | | || |||||| |
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| T |
7632845 |
agtaacgggcattcttctaaagactcctaatctgaaagctcttcatattcatacggtacatcttcaatcatgcttaacctctattata-tatgaaccatg |
7632943 |
T |
|
| Q |
233 |
ttttgaggttaagaaatactaatattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacga |
332 |
Q |
| |
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||| ||| | ||| |||||||||||||||||||| |||||||||| ||||| ||| || ||| ||||| ||||||||||||| |
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|
| T |
7632944 |
tttcaaggat----------------actcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacga |
7633025 |
T |
|
| Q |
333 |
ctggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaat |
432 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7633026 |
ctggacattactttcagtgccttactgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaag |
7633125 |
T |
|
| Q |
433 |
tttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctg |
532 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||| ||| |||||||||| |||||||||| |||||| |
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| T |
7633126 |
tttgttttaaaaaatgccagagttttagaagagatccggatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagctg |
7633225 |
T |
|
| Q |
533 |
tatgccccgaaagctgtctcatgacatttcagtagaca |
570 |
Q |
| |
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|| |||| ||||||||||||||||||||| ||||||| |
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|
| T |
7633226 |
tagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 31268050 - 31267996
Alignment:
| Q |
121 |
cactagtgaagtagtaatggacattctcctaaagactcctaatctgaaagctctt |
175 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| |
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|
| T |
31268050 |
cactagtgaagtactaatggacattctccgaaagactcctaaactggaagttctt |
31267996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
345 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
405 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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|
| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
345 |
ttcagtgccttgctgtttcaaatattctctcaa |
377 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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