View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_90 (Length: 311)

Name: NF0743_low_90
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_90
NF0743_low_90
[»] chr3 (1 HSPs)
chr3 (16-311)||(54115494-54115789)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 54115789 - 54115494
Alignment:
Q  16 atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacattgattccttacacaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54115789 atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacatggattccttacacaga 54115690  T
Q  116 tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54115689 tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg 54115590  T
Q  216 tcaggactctgaaggtacatatccttgacccgatgaggtgataaactctcaaagaactgaacttgatcgctttcttcacatgttttgttctctttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54115589 tcaggactctgaaggtacatatccttgacccgatgaggtgataaactctcaaagaactgaacttgatcgctttcttcacatgttttgttctctttt 54115494  T

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