View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_97 (Length: 293)
Name: NF0743_low_97
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_97 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 14736313 - 14736572
Alignment:
| Q |
1 |
tttggttttgtttttctccatctccgaggtgtatgagccaccacataaatcataaccaaggaaatgtgttatggaaattattcagcttgaggaattgaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14736313 |
tttggttttgtttttctctatctccgaggtgtatgagccaccacacaaatcataaccaagaaaatgtgttatggaaattattcagcttgaggaattgaag |
14736412 |
T |
|
| Q |
101 |
attttctgattttggaaaagcacccatttatctatcaacccaagttagatatttttgaatgctatgtcgtcaagaccaagattaggaacgtcatttaaga |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14736413 |
attttctgattttggaaaagcactcatttatctatcaacccaagttagatatttttgaatgatatgtcgtcaagaccaagattaggaacgtcatttaaga |
14736512 |
T |
|
| Q |
201 |
atattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacacagg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14736513 |
atattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacacagg |
14736572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University