View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_99 (Length: 280)
Name: NF0743_low_99
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_99 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 56 - 280
Target Start/End: Complemental strand, 11427306 - 11427084
Alignment:
| Q |
56 |
gatataactaggaacaaatattctaacagtacaatgataatgtttttctttagnnnnnnnggcaaagtacaatcataatgtaattctaggtcaccccaaa |
155 |
Q |
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| T |
11427306 |
gatataactaggaacaaatattctaacagtacaatgataatgtttttctttagaaaaaaaggcaaagtacaatcataatgtaattctaggtcaccccaaa |
11427207 |
T |
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| Q |
156 |
agacaagcaacttctactaaagcacatcttttattttggtatctaacacaagcttgtcactacaaaaggcatatacttccactttgaaatatactactac |
255 |
Q |
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| T |
11427206 |
agacaagcaacttctactaaagcacatcttttattttggtatctaacacaagcttgtcactacaaaaggcatatacttccactttgaa--atactactac |
11427109 |
T |
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| Q |
256 |
ttcgaaactgttaaaaaattattgt |
280 |
Q |
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| T |
11427108 |
ttcgaaactgttaaaaaattattgt |
11427084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 11434275 - 11434114
Alignment:
| Q |
118 |
caaagtacaatcataatgtaattctaggtcaccccaaaagacaagcaacttctactaaagcacatcttttattttggtatc---taacacaagcttgtca |
214 |
Q |
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| T |
11434275 |
caaagtataatcatattgtaattgtaggtcaccccaaaagacaaacaacttctacttaagcgcatctttt-tgtcggtatctaataacacaaacttgtca |
11434177 |
T |
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| Q |
215 |
ctacaaaaggcatatacttccactttgaaatatactactacttcgaaactgttaaaaaattattgt |
280 |
Q |
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| T |
11434176 |
ccataaaagcaagatacttcctctttgaaatatactacta---cgaaactgttgaaaaattattgt |
11434114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 11432432 - 11432368
Alignment:
| Q |
119 |
aaagtacaatcataatgtaattctaggtcaccccaaaagacaagcaacttctactaaagcacatc |
183 |
Q |
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| T |
11432432 |
aaagtacaatcataatgttatcctaggtcaccccaaaagataagcaacttctacttaaacacatc |
11432368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 11432349 - 11432307
Alignment:
| Q |
237 |
ctttgaaatatactactacttcgaaactgttaaaaaattattg |
279 |
Q |
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| T |
11432349 |
ctttgaaatatagtactacttcgaacatgttaaaaaattattg |
11432307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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