View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0744_high_5 (Length: 364)
Name: NF0744_high_5
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 24 - 353
Target Start/End: Complemental strand, 40985694 - 40985365
Alignment:
| Q |
24 |
ctcaacttttataaaagcaatagctctaaatgaattgtcaacaggacttcataatgatcattgcacatgtgttgttgtttacagtgctgcaaccatcctt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40985694 |
ctcaacttttataaaagcaatagctctaaatgaattgtcaatagggcttcataatgatcattgcacatgtgttgttgtttacagtgctgcaaccatcctt |
40985595 |
T |
|
| Q |
124 |
atctcctcaacccgtcactgaataatttagtcactagaggtctgcctgtcgaagagcattttaatattggaataaaagcaagtggaaaattgaaacttct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40985594 |
atctcctcaacccgtcactgaataatttagtcactagaggtctgcctgtcgaagagcattttaatattggaataaaagcaagtggaaaattgcaacttct |
40985495 |
T |
|
| Q |
224 |
tgaaaagatcctttttgaagctcaaagtcgtaagctaagagtgatcatattatttcaggtgattaccttttgtggtcccatgcttcttgtttgtctgtct |
323 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40985494 |
tgaaaagatcctttttgaagctaaaagtcgtaagctaagagtgatcatattatttcaggtgattaccttttgtggtcccatgcttcttgtttgtctgtct |
40985395 |
T |
|
| Q |
324 |
tatttcttgtatttctgtgagtttgttcat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40985394 |
tatttcttgtatttctgtgagtttgttcat |
40985365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3369 times since January 2019
Visitors: 4812