View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0744_high_6 (Length: 322)
Name: NF0744_high_6
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 32583017 - 32582820
Alignment:
| Q |
23 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
122 |
Q |
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| T |
32583017 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
32582918 |
T |
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| Q |
123 |
taagcaaattaattcatctttcacnnnnnnnnnnaaattttgttcaaggaaaaagaaactgttaaaaggaagtaacagatttattgcttagattatgtga |
222 |
Q |
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| T |
32582917 |
taagc-aattaattcatctttcacttttttt-----attttgttcaaggaaaaagaaactgttaaaaggaagttacagatttattgcttagattttgtga |
32582824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 38146610 - 38146675
Alignment:
| Q |
28 |
caaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatc |
93 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
38146610 |
caaactctcatctcaaccttcctttgttgataagaatctcctctatttattccaaaatcaacaatc |
38146675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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