View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0744_low_12 (Length: 320)
Name: NF0744_low_12
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 32583017 - 32582820
Alignment:
| Q |
22 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32583017 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
32582918 |
T |
|
| Q |
122 |
taagcaaattaattcatctttcacnnnnnnnnnaaattttgttcaaggaaaaagaaactgttaaaaggaagtaacagatttattgcttagattatgtgat |
221 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
32582917 |
taagc-aattaattcatctttcacttttttt----attttgttcaaggaaaaagaaactgttaaaaggaagttacagatttattgcttagattttgtgat |
32582823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 38146610 - 38146675
Alignment:
| Q |
27 |
caaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatc |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
38146610 |
caaactctcatctcaaccttcctttgttgataagaatctcctctatttattccaaaatcaacaatc |
38146675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4329 times since January 2019
Visitors: 4832