View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_13 (Length: 315)

Name: NF0744_low_13
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_13
NF0744_low_13
[»] chr5 (2 HSPs)
chr5 (92-315)||(12217153-12217377)
chr5 (275-313)||(6364501-6364539)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 92 - 315
Target Start/End: Complemental strand, 12217377 - 12217153
Alignment:
92 atgttcatgtgatatcaatcacttatttattcattcatcaattattgttatcactact-aactttttaattataagctaacaactaaatttcaactataa 190  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
12217377 atgttcatgtgatatcaatcacttatttattcattcatcaatgattgttatcactacttaactttttaattataagctaacaactaaatttcaactataa 12217278  T
191 ttagctaataagctagttttacaacttatatcttaaccatatcaaaccttaatagaagttacaagaccatcttgatgggaagatgtgttgtatatacaac 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12217277 ttagctaataagctagttttacaacttatatcttaaccatatcaaaccttaatagaagttacaagaccatcttgatgggaagatgtgttgtatatacaac 12217178  T
291 caaaatccagacaacccttccaaca 315  Q
    |||||||||||||||||||||||||    
12217177 caaaatccagacaacccttccaaca 12217153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 6364501 - 6364539
Alignment:
275 gtgttgtatatacaaccaaaatccagacaacccttccaa 313  Q
    ||||| |||||||||||||||||||||||||| ||||||    
6364501 gtgttatatatacaaccaaaatccagacaacctttccaa 6364539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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