View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0744_low_13 (Length: 315)
Name: NF0744_low_13
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0744_low_13 |
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[»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 92 - 315
Target Start/End: Complemental strand, 12217377 - 12217153
Alignment:
Q |
92 |
atgttcatgtgatatcaatcacttatttattcattcatcaattattgttatcactact-aactttttaattataagctaacaactaaatttcaactataa |
190 |
Q |
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T |
12217377 |
atgttcatgtgatatcaatcacttatttattcattcatcaatgattgttatcactacttaactttttaattataagctaacaactaaatttcaactataa |
12217278 |
T |
 |
Q |
191 |
ttagctaataagctagttttacaacttatatcttaaccatatcaaaccttaatagaagttacaagaccatcttgatgggaagatgtgttgtatatacaac |
290 |
Q |
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T |
12217277 |
ttagctaataagctagttttacaacttatatcttaaccatatcaaaccttaatagaagttacaagaccatcttgatgggaagatgtgttgtatatacaac |
12217178 |
T |
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Q |
291 |
caaaatccagacaacccttccaaca |
315 |
Q |
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T |
12217177 |
caaaatccagacaacccttccaaca |
12217153 |
T |
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Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 6364501 - 6364539
Alignment:
Q |
275 |
gtgttgtatatacaaccaaaatccagacaacccttccaa |
313 |
Q |
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T |
6364501 |
gtgttatatatacaaccaaaatccagacaacctttccaa |
6364539 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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