View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_15 (Length: 301)

Name: NF0744_low_15
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_15
NF0744_low_15
[»] chr6 (12 HSPs)
chr6 (64-222)||(4266438-4266596)
chr6 (64-222)||(4458297-4458455)
chr6 (68-219)||(4481399-4481550)
chr6 (71-185)||(3172450-3172564)
chr6 (71-210)||(4506566-4506705)
chr6 (76-185)||(4575022-4575131)
chr6 (57-218)||(4514397-4514558)
chr6 (71-153)||(4503726-4503808)
chr6 (76-185)||(4561218-4561327)
chr6 (68-153)||(4299162-4299247)
chr6 (76-139)||(4470517-4470580)
chr6 (75-127)||(4484150-4484202)
[»] chr5 (1 HSPs)
chr5 (64-222)||(24103701-24103859)
[»] chr8 (1 HSPs)
chr8 (76-185)||(20863152-20863261)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 4266596 - 4266438
Alignment:
Q  64 agagtagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaat 163  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4266596 agagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcggtaataaat 4266497  T
Q  164 tttatcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttcaacct 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4266496 tttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacct 4266438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 4458297 - 4458455
Alignment:
Q  64 agagtagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaat 163  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||    
T  4458297 agagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctgccacttcggttataaat 4458396  T
Q  164 tttatcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttcaacct 222  Q
    ||||||||||||| |||||||| ||||||| || |||||||||||||||||||||||||    
T  4458397 tttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacct 4458455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 4481399 - 4481550
Alignment:
Q  68 tagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaatttta 167  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||| |||||| |||| | ||||||  |  || ||||||    
T  4481399 tagagagaattcataacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgacatttatctgtcacttcatttttatatttta 4481498  T
Q  168 tcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttcaa 219  Q
    | ||||| | |||||||| ||| | | |  | ||||||||||||||||||||    
T  4481499 tgatcaagtgattaggatctgttaccttaattaaatcaggaaggtccttcaa 4481550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 3172450 - 3172564
Alignment:
Q  71 agagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatca 170  Q
    |||||||||||||||||||||||||||| || |||||| |||| |||||||| ||| ||| |||||||| ||||  | |||||  | ||||||| |||||    
T  3172450 agagtattcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatca 3172549  T
Q  171 tcaaatcattaggat 185  Q
    |||||||||||||||    
T  3172550 tcaaatcattaggat 3172564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 4506566 - 4506705
Alignment:
Q  71 agagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatca 170  Q
    |||| ||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||| ||| || | || ||  ||||  ||||||||| ||||     
T  4506566 agagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcc 4506665  T
Q  171 tcaaatcattaggatatgtaatccttgtaaaatcaggaag 210  Q
    ||||||| ||||||| |||  ||||| |||||||||||||    
T  4506666 tcaaatcgttaggatctgttgtccttataaaatcaggaag 4506705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 4575022 - 4575131
Alignment:
Q  76 attcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaa 175  Q
    ||||||||||||||||||||||| || |||||||||||  || |||  ||| ||||| |||||| |||| |||||||| ||| ||||| ||||| ||||     
T  4575022 attcataacatcactctcaagttcattagaagtattgaataccataccagaagctctatgacatttatctgccacttcagtattaaatcttatcgtcaag 4575121  T
Q  176 tcattaggat 185  Q
    ||||||||||    
T  4575122 tcattaggat 4575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 4514558 - 4514397
Alignment:
Q  57 ggagcagagagtagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggt 156  Q
    |||||| ||| || |||| ||||||||||||||||||||| | || ||||||||| | || ||||| ||| ||||| |||  ||||||  ||| |||       
T  4514558 ggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatctaccatttcaaa 4514459  T
Q  157 aataaattttatcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttca 218  Q
     ||||||| || |||||||||||||| || |||  ||| | |||||||||||||||||||||    
T  4514458 gataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttca 4514397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 4503808 - 4503726
Alignment:
Q  71 agagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttc 153  Q
    |||| ||||||| ||||||||||||||| || ||||||||||| |||||| |  |||||||| |||||| |||| ||||||||    
T  4503808 agagcattcatagcatcactctcaagttcattagaagtattgaaaacaatggctgaggctctttgacatttatctgccacttc 4503726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 4561218 - 4561327
Alignment:
Q  76 attcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaa 175  Q
    ||||||||||||||||||||||| || |||||||||||  || |||  ||| |||||  ||||| |||| |||||||| ||  ||||| ||||| ||||     
T  4561218 attcataacatcactctcaagttcattagaagtattgaataccataccagaagctctaagacatttatctgccacttcagtgttaaatcttatcgtcaag 4561317  T
Q  176 tcattaggat 185  Q
    ||||||||||    
T  4561318 tcattaggat 4561327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 4299247 - 4299162
Alignment:
Q  68 tagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttc 153  Q
    ||||||| |||||| |||||||||||||||| || | ||||||| | |||||||| ||| ||| ||||| ||||||| ||| ||||    
T  4299247 tagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttc 4299162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 4470517 - 4470580
Alignment:
Q  76 attcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacat 139  Q
    ||||||||||||||| ||||||| || ||||||||| | |||||||| ||| ||||| ||||||    
T  4470517 attcataacatcactttcaagttcattagaagtattcaaaacaatagcagaagctctttgacat 4470580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 4484202 - 4484150
Alignment:
Q  75 tattcataacatcactctcaagtttataagaagtattgataacaatagaagag 127  Q
    ||||||||||||||||||| |||| || | ||||||||| |||| ||||||||    
T  4484202 tattcataacatcactctctagttcattaaaagtattgaaaacattagaagag 4484150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 24103701 - 24103859
Alignment:
Q  64 agagtagagagtattcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaat 163  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  24103701 agagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctctgtgacatcttaccgccacttcggtaataaat 24103800  T
Q  164 tttatcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttcaacct 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24103801 tttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacct 24103859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 20863261 - 20863152
Alignment:
Q  76 attcataacatcactctcaagtttataagaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaa 175  Q
    ||||||||||||||||||||| | ||   ||||||||| |||||||| ||||||||||||| |||||||  | |||||  | | ||||| ||||| | ||    
T  20863261 attcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattctatcaacgaa 20863162  T
Q  176 tcattaggat 185  Q
    ||||||||||    
T  20863161 tcattaggat 20863152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3965 times since January 2019
Visitors: 4825